Query= MSMg01no348_m09.b1 MSMg01no348_m09.b1 CHROMAT_FILE:
MSMg01no348_m09.b1 PHD_FILE: MSMg01no348_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:11 2005
(560 letters)
>mm_chr6_94067681_94068640
Length = 960
Score = 967 bits (500), Expect = 0.0
Identities = 543/564 (96%), Gaps = 14/564 (2%)
Strand = Plus / Plus
Query: 9 gaattccatctatcctgttcagctactaagttttgagatacatttattacacagcaataa 68
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattccatctatcatgttcagctactaagttttgagatacatttattacacagcaataa 268
Query: 69 ataactaatacaacttcccagccagagacattgattgtcacaacaaagctgtcacctgtt 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ataactaatacaacttcccagccagagacattgattgtcacaacaaagctgtcacctgtt 328
Query: 129 atttagctcactcatgtccaaagactcccaattcttgaggatgtaacccagctgccctaa 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atttagctcactcatgtccaaagactcccaattcttgaggatgtaacccagctgccctaa 388
Query: 189 acaaatgcacagggcaggaaaattgaacactaatctcatggaaaaaagactgatggtcaa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acaaatgcacagggcaggaaaattgaacactaatctcatggaaaaaagactgatggtcaa 448
Query: 249 aaactgtgagagaacctaagaacttatttcctactttgagagaactctgggaggtcttag 308
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 449 aaactgtgagagaacctaagaacttatttcctactctgagagaactctgggaggtcttag 508
Query: 309 cacatcaaaaactctgggggctggagagatggctcaccagttaagaag-actgactgttc 367
||||||||||||||||||| ||||||||| |||||||||||||||| | |||||||||||
Sbjct: 509 cacatcaaaaactctgggg-ctggagagacggctcaccagttaaga-gcactgactgttc 566
Query: 368 ttccagaggtcctgagttcaactcccagcaaccacatggtggctcacaaccaactgtaat 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttccagaggtcctgagttcaactcccagcaaccacatggtggctcacaaccaactgtaat 626
Query: 428 gggatctgatgtcctcttcagatatgtctgaagacagctacagtttactcatataaatat 487
||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||
Sbjct: 627 gggatctgatgtcctcttcaggtatgtctggagacagctacagtttactcatttaaatat 686
Query: 488 gactttaagaaacaaaac-----------tctgaccctgaccgccactggctacttttcc 536
|| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 687 gattttaagaaacaaaacaaaaacaaaactctgaccctgaccgccactggctacttttcc 746
Query: 537 aggagactagggtttgactcccag 560
||||||||||||||||||||||||
Sbjct: 747 aggagactagggtttgactcccag 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_m09.g1 MSMg01no348_m09.g1 CHROMAT_FILE:
MSMg01no348_m09.g1 PHD_FILE: MSMg01no348_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:11 2005
(385 letters)
>mm_chr6_94234117_94234901
Length = 785
Score = 706 bits (365), Expect = 0.0
Identities = 380/385 (98%)
Strand = Plus / Minus
Query: 1 cgaggtggccggctcgcccacgcttgtgcaggacccgcactctgcggtgatctttactcc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 585 cgaggtggccggctcgcccacgcttgtgcaggacccgcaccctgcggtgatctttactcc 526
Query: 61 ccaaagcagtgcttaggtttctcggctctcccagaagccaaagggggctgggcaccgccg 120
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 525 ccaaagcagtgcttaggtttctcggctctcctagaagccaaagggggctggccaccgccg 466
Query: 121 ccccctttgctggaaggacaatgagaggccagcgagaagtcttaggtaaaaaggccacgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ccccctttgctggaaggacaatgagaggccagcgagaagtcttaggtaaaaaggccacgc 406
Query: 181 tagctttggcttttctcgctcgctggcagttttctccttgtcctaaaaagttggccccaa 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 405 tagctttggcttttctcgctcgctggcagttttttccttgtcctaaaaagttggccccaa 346
Query: 241 agtttaacgatgggagcgtatgtgtaggtgcgtttggtgggcgcggacagggatgcagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 agtttaacgatgggagcgtatgtgtaggtgcgtttggtgggcgcggacagggatgcagag 286
Query: 301 ggtgtgtgggtcttgttgattcgggtcctcagggccacagagacaagagccaggctccgc 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 285 ggtgtgtgggtcttgttgattcgggtcctcagggtcacagagacaagagccaggctccgc 226
Query: 361 atgtggacttgaacccctgggcggg 385
|||||||||||||||||||||||||
Sbjct: 225 atgtggacttgaacccctgggcggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space: 291776
Effective search space used: 291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
