Query= MSMg01no349_c14.b1 MSMg01no349_c14.b1 CHROMAT_FILE:
MSMg01no349_c14.b1 PHD_FILE: MSMg01no349_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:41 2005
(662 letters)
>mm_chr6_32462704_32463765
Length = 1062
Score = 1220 bits (631), Expect = 0.0
Identities = 649/655 (99%)
Strand = Plus / Minus
Query: 8 gaattcttcaatctatccgtgtcaagctgacataaaacttatcattgcagttgctgttgc 67
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gaattcttcaatctagctgtgtcaagctgacataaaacttatcattgcagttgctgttgc 803
Query: 68 tggagataaccaaaggaggctacaatttaagaggttgactttaagggtttgtgtttggag 127
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 802 tggagataaccaaaggaggctacaacttaagaggttgactttaagggtttgtgtttggag 743
Query: 128 ggtgggaatacctgtgggttttattgtagttataacttggagagtttacaaaggggatat 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ggtgggaatacctgtgggttttattgtagttataacttggagagtttacaaaggggatat 683
Query: 188 gaccagagatttgttttgattatacactttattctgattatgaaaattagaatgcctatc 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gaccagagatttgttttgattatacactttattctgattatgaaaattagaatgcctatc 623
Query: 248 agaagatatttattgagcttatatggccttttccatttcctgacacctatatttcttctc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agaagatatttattgagcttatatggccttttccatttcctgacacctatatttcttctc 563
Query: 308 ctgaactcagagctgagagtggtctgaccctgggtcacttgcctacctcatgaatccaga 367
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 562 ctgaactcagagctgagagtggtctgaccctgggtcacttgcctaactcatgaatccaga 503
Query: 368 gccttctgattgcaactatcagagaactcaatggtgcttctgcttctccatgggcgagga 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gccttctgattgcaactatcagagaactcaatggtgcttctgcttctccatgggcgagga 443
Query: 428 agactggctgtgttcatgtcagaagagaggctgggaacggccaggagtggtctcctatga 487
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agactggctgtattcatgtcagaagagaggctgggaacggccaggagtggtctcctatga 383
Query: 488 ctgagtggctatgagtatagaaacatttgcaagtgtcagtgcctgggctgtgttggatat 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctgagtggctatgagtatagaaacatttgcaagtgtcagtgcctgggctgtgttggatat 323
Query: 548 agacactgtgggagctggtgaggcatctttaggtgtttggggatggaagaatcctccaac 607
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 322 agacactgtgggagctggtgaggcatctttaggtgtttggggatggaagcatcctccaac 263
Query: 608 tttgctttctgagcctttcttttcctgtgtcctgttcatctctaatccaaatgga 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tttgctttctgagcctttcttttcctgtgtcctgttcatctctaatccaaatgga 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_c14.g1 MSMg01no349_c14.g1 CHROMAT_FILE:
MSMg01no349_c14.g1 PHD_FILE: MSMg01no349_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:41 2005
(590 letters)
>mm_chr6_32321032_32322025
Length = 994
Score = 1087 bits (562), Expect = 0.0
Identities = 585/594 (98%), Gaps = 4/594 (0%)
Strand = Plus / Plus
Query: 1 agtggagtgggaaggaggcggggacagtggagtttggagaggggtctgtcagctgcagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggagtgggaaggaggcggggacagtggagtttggagaggggtctgtcagctgcagag 260
Query: 61 tggctgagccagcaggcagttattcgctgagaag-aaaaaaaccatatctctcttgtcct 119
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 261 tggctgagccagcaggcagttattcggtgagaagaaaaaaaaccatatctctcttgtcct 320
Query: 120 cactttctccttttgttggaaggatattttatcctacccacattaatgat---gaagaag 176
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 cactttctccttttgttggaaggatattttatcctacccacattaatgatgaagaagaag 380
Query: 177 aagaagggggaaagacaataaaaaatgggatgagtgtggaggaaagtgggagcatttgga 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaagggggaaagacaataaaaaatgggatgagtgtggaggaaagtgggagcatttgga 440
Query: 237 aaggaagcatgtgaggccagaagttagtttaaatgaatcatctctctgcctccctgaata 296
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggaagcgcgtgaggccaggagttagtttaaatgaatcatctctctgcctccctgaata 500
Query: 297 ttttgattaaagccataggacctcaatcaaagccactgaaaggaaataaaaagatgtctg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttgattaaagccataggacctcaatcaaagccactgaaaggaaataaaaagatgtctg 560
Query: 357 agaacaattttgtttgctggaattttccctcctgtgttctattatgatggggggtggtga 416
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 agaacaattttgtttgctggaattttccctcctgtgttctattatgatgggggatggtga 620
Query: 417 agaacaaaaagagagttggttgtatgtggtcctcctttgatctttcaaaggaaagaagga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaacaaaaagagagttggttgtatgtggtcctcctttgatctttcaaaggaaagaagga 680
Query: 477 cattaaaaaagagaaggagaaattgacacctattttgtcccttctttccttgaatggtat 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cattaaaaaagagaaggagaaattgacacctattttgtcccttctttccttgaatggtat 740
Query: 537 caatagcgcaacaggatctgaacagatattcagcagctcccagtccaggctgat 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caatagcgcaacaggatctgaacagatattcagcagctcccagtccaggctgat 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 994
Length adjustment: 10
Effective length of query: 580
Effective length of database: 984
Effective search space: 570720
Effective search space used: 570720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
