TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCAGCCAAAACATTCAGATAACTTTCCTAACCTCTTTCTGAAGGAAAAA
ATCTAATAGGAATAGAAATAGAAATCTAGTTTGTTTTTTTTTGTTTTTTT
TTTTTGGTTTTTTTTTTTTTAATGTGAAGAGGCTTAATTGAAAAGGCAAG
TCCTACCGGGTGTGGTGGCACATGCCTTTAATCCCAGCACTCGGGAGGCA
GAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGT
TCCAGGACAACCAGAGCTATACAGAAAAACCCTGGCTCAAAAAAAACAAA
AAACCAAACAAACAGAAAAGGCAAGTCCTAACTTATAAATAAGCATTCAT
ATAGGGGTACAAAATAGGACATAAAAATGTTATTAGTAATCTATCGTGAA
TTTAATTCATGTCTTTCTGTACTTACAAGACAGAATATATAAAACATTTT
AGATTGCTATAAACTGTGCTATAGGAATTCAGAAGAGAACAGAGCATTCC
TAAAGAAGTGTGTATTTTCACTGTACACTACATTCAAGCCATGACTTGTA
ATGGCTTANTAAATTTTGTGAAAATATTTCTTGCTATATATTTGGNACTC
ATTTAAATAATGTTGAACAACTGCCATGGATTGATATAGTGCTTATGAGC
CATTAATAATTTTCAGTATCACAAGATGACTTCAGTTAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGAATTTTGGTTTCTTTTAAAAA
TGCAGAAATATTACAAGAATGTACTTTCATTTTAATCCCAGGTGTAGTGA
TGTGTGGCTGCTTCTGACTGTTGCAGCCACTGACCATGAGTTGCTTCATG
CTCTAGCGGAAGCATGGTTTTGTCAGCTACAGATTTCTGTGATGGTGTTA
CATCTGGAATTCCAGGAACTTTTTGGAAGGTACATAAATGTGAGGACCCC
GAAAGACAGGGTGGTGGTGGGGGTTATTGGTGNNNNNNNNNNNNNNNNNT
NNTNNNNNNNTNTTNNNTTTTTTTTTTTTTTTTGTNTTTTTTTNTNTTTT
TTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTCCTTCCTTTTTTTGTTCGT
TNTTTTCTCTTTCTTTCTCTTTTTCTTGCTCTCCCTTCCCTTCTTTCCTT
TTTCTTCTCCCCTTTCCCTCTTTGCTTTTCTCTCTCTCCCTCTTCTCTCC
TCTTTCCCTTCCTTTTCCTCCCCCTCCCCTTTTCCCCTCCTTTCCTTTTT
TTTTCCTCTTTGTCCTCCTTCTCCCTCCCTCTCCCTTTTTTTCTCTCTTT
TTCTCTTTCCCCCCCTCTCTTTTTTTTTTTTTCTTCCCCCTCCTTTCTCC
TTCCTTCCGTTCTTCTTTGTCCCCTTCCTTTCTCTCTCTCTCTTTCCCCT
CCCG

Query= MSMg01no349_d11.b1 MSMg01no349_d11.b1 CHROMAT_FILE:
MSMg01no349_d11.b1 PHD_FILE: MSMg01no349_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:46 2005
         (580 letters)



>mm_chr6_149463233_149464212
          Length = 980

 Score = 1004 bits (519), Expect = 0.0
 Identities = 557/578 (96%), Gaps = 16/578 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagccaaaacattcagataactttcctaacctctttctgaaggaaaaaatcta 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattctcagccaagacattcagataactttcctaacctctttctgaaggaaaaaatcta 276

                                                                       
Query: 65  ataggaatagaaatagaaatctagtttgttt--ttttttgttttttttttttggtttttt 122
           |||||||||||||||||||||||| ||||||  ||    |||||||||||||        
Sbjct: 277 ataggaatagaaatagaaatctagcttgtttggttg---gtttttttttttt-------- 325

                                                                       
Query: 123 tttttttaatgtgaagaggcttaattgaaaaggcaagtcctaccgggtgtggtggcacat 182
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 --ttttaaatgtgaagaggcttaattgaaaaggcaagtcctaccgggtgtggtggcacat 383

                                                                       
Query: 183 gcctttaatcccagcactcgggaggcagaggcaggcggatttctgagttcgaggccagcc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcctttaatcccagcactcgggaggcagaggcaggcggatttctgagttcgaggccagcc 443

                                                                       
Query: 243 tggtctacaaagtgagttccaggacaaccagagctatacagaaaaaccctggctcaaaaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggtctacaaagtgagttccaggacaaccagagctatacagaaaaaccctggctcaaaaa 503

                                                                       
Query: 303 aaacaaaaaaccaaacaaacagaaaaggcaagtcctaacttataaataagcattcatata 362
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aa-caaaaaaccaaacaaacagaaaaggcaagtcctaacttataaataagcattcatata 562

                                                                       
Query: 363 ggggtacaaaataggacataaaaatgttattagtaatctatcgtgaatttaattcatgtc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggggtacaaaataggacataaaaatgttattagtaatctatcgtgaatttaattcatgtc 622

                                                                       
Query: 423 tttctgtacttacaagacagaatatataaaacattttagattgctataaactgtgctata 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tttctgtacttacaagacagaatatataaaacattttagattgctataaactgtgctata 682

                                                                       
Query: 483 ggaattcagaagagaacagagcattcctaaagaagtgtgtattttcactgtacactacat 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggaattcagaagagaacagagcattcctaaagaagtgtgtattttcactgtacactacat 742

                                                 
Query: 543 tcaagccatgacttgtaatggcttantaaattttgtga 580
           ||||||||||||||||||||||||| ||||||||||||
Sbjct: 743 tcaagccatgacttgtaatggcttagtaaattttgtga 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)