Query= MSMg01no350_f07.b1 MSMg01no350_f07.b1 CHROMAT_FILE:
MSMg01no350_f07.b1 PHD_FILE: MSMg01no350_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:13 2005
(437 letters)
>mm_chr6_22228188_22229024
Length = 837
Score = 777 bits (402), Expect = 0.0
Identities = 426/434 (98%)
Strand = Plus / Minus
Query: 4 ggaattcaaaaatgtcccaataaaagcatttttccagtcataaatatatttcacagctgg 63
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ggaattcaaaaatgagcaaataaaagcatttttccagtcataaatatatttcacagctgg 578
Query: 64 agaaagcagaagagggtaagaaggttgggctcacacaggactgcttttccttcgggttta 123
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 agaaagcagaagagggtaggaaggttgggctcacacaggactgcttttccttcgggttta 518
Query: 124 gatgttcttagtaacttcatcaagccgaggggtttttgtgtgcctactttttaaatgttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gatgttcttagtaacttcatcaagccgaggggtttttgtgtgcctactttttaaatgttt 458
Query: 184 aaacaatgctatctgaccaaagacatataatagactggagccagggacaccttgaataca 243
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aaacaatactatctgaccaaagacatataatagactggagccagggacaccttgaataca 398
Query: 244 gagatcttcctgtaacaattctgataacaacagggtttataaaaagttagatagtggcac 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 397 gagatcttcctgtaacaattctgataacaacagggcttataaaaagttagatagtggcac 338
Query: 304 agatggtccagcgagtcatgtacaaaaggagaatctcccaggttctcacttgctaattct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agatggtccagcgagtcatgtacaaaaggagaatctcccaggttctcacttgctaattct 278
Query: 364 ttccccagaagcagcaacttctatttcttcaattgattcttttagtattcttctttgtta 423
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttccccagaagtagtaacttctatttcttcaattgattcttttagtattcttctttgtta 218
Query: 424 cattattattgttg 437
||||||||||||||
Sbjct: 217 cattattattgttg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_f07.g1 MSMg01no350_f07.g1 CHROMAT_FILE:
MSMg01no350_f07.g1 PHD_FILE: MSMg01no350_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:13 2005
(273 letters)
>mm_chr6_22010987_22011659
Length = 673
Score = 420 bits (217), Expect = e-122
Identities = 250/269 (92%), Gaps = 13/269 (4%)
Strand = Plus / Plus
Query: 5 actaggaataaaaatttcaatgaaccgataatttttctttaaatttaagacacatttcta 64
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 205 actaggaataaaaatttcaatgaaccggtaatttttctttaaatttaagatacatttcta 264
Query: 65 aaataaatagcatgtgattttttttctatctgtgtcatttcatagtacacttgtggttga 124
|||||||||||||||||||||||||| | ||||||||||||||||||||||| ||| |||
Sbjct: 265 aaataaatagcatgtgattttttttccacctgtgtcatttcatagtacacttatggctga 324
Query: 125 ctgcggagaccttagctctttaattgtgctcttttaagctaaagcctggtttgctcagcc 184
||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 ctgcggagaccttagctcttt-------------taagctaaagcctggtttgctcagcc 371
Query: 185 tggcctcaaacactctgagtagccaatactatccttgaatttctgatttccttgcctcta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tggcctcaaacactctgagtagccaatactatccttgaatttctgatttccttgcctcta 431
Query: 245 atccccaagtgattggggttgtaggtgtg 273
|||||||||||||||||||||||||||||
Sbjct: 432 atccccaagtgattggggttgtaggtgtg 460
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space: 175296
Effective search space used: 175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
