BAC Information

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BAC

Clone NameMSMg01-350G07
Chromosome6 (Build37)
Map Location 136,871,032 - 137,038,041
singlet/doubletdoublet
Overlap geneArhgdib, Pde6h, Rerg
Upstream geneGrin2b, EG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp, Erp27
Downstream genePtpro, Eps8, Strap, Dera, 9830102E05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350G07.T7 (MSMg01no350_g07.b1)MSMg01-350G07.TJ (MSMg01no350_g07.g1)
ACCAG462017AG462018
length756782
length of high quality
(start - end)		467 (79 - 545)402 (86 - 487)
definitionCHROMAT_FILE: MSMg01no350_g07.b1 PHD_FILE: MSMg01no350_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:18 2005CHROMAT_FILE: MSMg01no350_g07.g1 PHD_FILE: MSMg01no350_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,037,655 - 137,038,041)(136,871,032 - 136,871,433)
sequence
NGGGGAAGATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGA
ACCGCGGAATTCCAGATTTACTATTAAACTTCGAGCTGCTCGCTCTGCAA
TACATTGTCTATCAAAGAAAAATCAAATCCTTCCTTTCAGTGATCAGATG
CTTCCTGCTATCAAATCAATTCTCTTCATATTCATCTGCAAATTCTTTGT
GATGTCAGCCTCTGCCTGGCCTTTATCTCCTCCCACCTTTCTCTTTGTCC
TCTCTCAGTTTGGTGCTACTAGCTTGCCTCTCTTCCTTAAACAAGTGCAT
TTGCATCTTGGGATTTGCACACACTTTTTCTTATGCTTGGCACGTTCTTC
TCCCAGATGCGTAGATATCTGCCTTCAGGCTTACACTTCCACAACTCTCC
CTGCCCCTCTTCTGCACTTGACCCCACAAAATACAGCAGTTTAAAAACTT
GTGTTCTGATTTGTTATGTGTTTTCCTGAAAGCTAAGGGTCATGTAACTC
CTGGGAAGAGGACTTTGTCTATTTGTATTCCTAGGACCCAACAGAGCCTG
CTATGTGATAATTGCTTGTTTGATAAATATTGAATGAATGAATGCATGAA
TGAATGAAAAAAGGATTGAATGAATGAACTAAAAATTACTGAAGGCCCGT
AAACGTTTTTTTTTATTATTCCCAAAGGCCTTAACCTTAATCGTTAACTA
TCACAAATGTGCCGTCGGCGTTAAAAACCCTAAATCAATGGGCTCTTTCA
TTCACG

CCTTCCCCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGG
CTGTCCTCAAACTCAGAAATCTGCCTGCCTCTGTCTCCCAAGTGCTGGGA
TTAAAGGCGTGCGCCACCACTGCCCAGCTCAGCTTACATTCTTGATGGGA
GAGGTGAACACAAAAATCCATGATTTAAACATGTATCAGAGAGTGGTAAA
ACACAGAAAAATTCATAGGCTGCTGTGAGAGACACGGGGAACTCTTAGGG
CCATGTGGGATTTGATGGAGGATGTCTGCCTCGAAGTCGCTACAGACAGA
GGCCTGGGCGAATAGGCTCTGGGCATCAAAATGTGGAACGGACTTGTGTT
GCTTTTCCCTGCTGTGAGAAAATATTTTAAGTGACCAGAGCAACCTAAAG
AAGGTGGGGTTTATTTTGGTTCCCAGTTTGAGGGTGCAGTCAATCTCAGC
ATGGAATGCTCCCGTCTTGCAGTAAAGGCCCCTGTATGAAATTAATACCG
TCTGTTCACATTATACCCTCTCCTCAGTAATGATTATCGATCTCATGCTT
TTATCTTCCTTTTTCATTTTCCCCTCTTTACTCACTCCCCTACTTTTCTG
TCACCTTCCTTTACCTCTTTTTTCTTCTTTCCTACTCTCCCCTCTATTCC
GCTTTTACCTCCTCTTCTTCATTTTCTTTCCCCTCTCCTACTCTACTCAC
ACTCCTTTAGCGTTATCCTCCCATCTTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_g07.b1 MSMg01no350_g07.b1 CHROMAT_FILE:
MSMg01no350_g07.b1 PHD_FILE: MSMg01no350_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:18 2005
         (467 letters)



>mm_chr6_137037175_137038041
          Length = 867

 Score =  725 bits (375), Expect = 0.0
 Identities = 384/387 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  tatcaaatcaattctcttcatattcatctgcaaattctttgtgatgtcagcctctgcctg 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 tatcaaatcaattctcttcatattcatctgcaaattctttgtgatgtcagcctctgcctg 808

                                                                       
Query: 141 gcctttatctcctcccacctttctctttgtcctctctcagtttggtgctactagcttgcc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gcctttatctcctcccacctttctctttgtcctctctcagtttggtgctactagcttgcc 748

                                                                       
Query: 201 tctcttccttaaacaagtgcatttgcatcttgggatttgcacacactttttcttatgctt 260
           ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 747 tctcttccttaaacaagtgcatttgcatcttgggatttgcacacactcttccttatgctt 688

                                                                       
Query: 261 ggcacgttcttctcccagatgcgtagatatctgccttcaggcttacacttccacaactct 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggcacgttcttctcccagatgcgtagatatctgccttcaggcttacacttccacaactct 628

                                                                       
Query: 321 ccctgcccctcttctgcacttgaccccacaaaatacagcagtttaaaaacttgtgttctg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ccctgcccctcttctgcacttgaccccacaaaatacagcagtttaaaaacttgtgttctg 568

                                                                       
Query: 381 atttgttatgtgttttcctgaaagctaagggtcatgtaactcctgggaagaggactttgt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 567 atttgttatgtgttttcctgaaagctaagggtcatgtaactcctgggaagaggcctttgt 508

                                      
Query: 441 ctatttgtattcctaggacccaacaga 467
           |||||||||||||||||||||||||||
Sbjct: 507 ctatttgtattcctaggacccaacaga 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no350_g07.g1 MSMg01no350_g07.g1 CHROMAT_FILE:
MSMg01no350_g07.g1 PHD_FILE: MSMg01no350_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:18 2005
         (402 letters)



>mm_chr6_136870832_136871633
          Length = 802

 Score =  777 bits (402), Expect = 0.0
 Identities = 402/402 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtagaccaggctgtcctcaaactcagaaatctgcctgcctctgtctcccaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtagaccaggctgtcctcaaactcagaaatctgcctgcctctgtctcccaagtgc 260

                                                                       
Query: 61  tgggattaaaggcgtgcgccaccactgcccagctcagcttacattcttgatgggagaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggcgtgcgccaccactgcccagctcagcttacattcttgatgggagaggt 320

                                                                       
Query: 121 gaacacaaaaatccatgatttaaacatgtatcagagagtggtaaaacacagaaaaattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacacaaaaatccatgatttaaacatgtatcagagagtggtaaaacacagaaaaattca 380

                                                                       
Query: 181 taggctgctgtgagagacacggggaactcttagggccatgtgggatttgatggaggatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggctgctgtgagagacacggggaactcttagggccatgtgggatttgatggaggatgt 440

                                                                       
Query: 241 ctgcctcgaagtcgctacagacagaggcctgggcgaataggctctgggcatcaaaatgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcctcgaagtcgctacagacagaggcctgggcgaataggctctgggcatcaaaatgtg 500

                                                                       
Query: 301 gaacggacttgtgttgcttttccctgctgtgagaaaatattttaagtgaccagagcaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaacggacttgtgttgcttttccctgctgtgagaaaatattttaagtgaccagagcaacc 560

                                                     
Query: 361 taaagaaggtggggtttattttggttcccagtttgagggtgc 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaagaaggtggggtttattttggttcccagtttgagggtgc 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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