BAC Information

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BAC

Clone NameMSMg01-350H18
Chromosome6 (Build37)
Map Location 33,246,990 - 33,406,348
singlet/doubletdoublet
Overlap geneExoc4
Upstream genePlxna4, Chchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350H18.T7 (MSMg01no350_h18.b1)MSMg01-350H18.TJ (MSMg01no350_h18.g1)
ACCAG462086AG462087
length793803
length of high quality
(start - end)		459 (48 - 506)431 (81 - 511)
definitionCHROMAT_FILE: MSMg01no350_h18.b1 PHD_FILE: MSMg01no350_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:25 2005CHROMAT_FILE: MSMg01no350_h18.g1 PHD_FILE: MSMg01no350_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,405,915 - 33,406,348)(33,246,990 - 33,247,420)
sequence
NNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCG
CGGAATTCCATGTACTTCTCATTGCATTTTCAAATCAGCCTCTGACACTG
TTCCCATTCGTCCTAGGAAGGCCAGAAGTCTTGTAGGAGCCCACCTTGTG
ACGTCACTGCTTTCACTGCGCTCACATCCGTCTCCACACAGACATCGAGC
ACTTTTCTAGTATGGAAAGTTGACTACCTCCTTCTCCTCCAGGGAGACCT
CAGAGATTATCATTCATAGGAGATAATACAAGCTTTATGTTATATTATAA
AGTCTTTTAAGATCTACTCATTTTTTTCCCATCCCTAGGTCCAATCTTTC
TCATACACTCACTTTGACCAAAATAAAATGTTTATAACTGCAGGGCAGTC
CCATATCTGTGGACTCAGGTACAACCACTCCAGAGTGTAGCCAATTAACT
ACATTTGGTCACTCAAACTGCCTTGGTCAGGTGGTTAACTAATTTTTAAC
CTTAGAGGTACAGCCCCTTCCTCTATAATGTCTTCTATGACTTTCCCAGA
AAATATTGGCTTTTCTCCTTTGGACTACCAAGGAAGGTGGGGGAACTTAC
CAGAACTTTTGGCTTCTATAAAACCACCTGTCCCTTCTTACCCGGGAGAT
GGACAAGGAGCCCTCTTAAAAAAAAGCCCCAAAAAAAATAGGTTCAAAAA
GGGACCGGCACCCCCCTTATGGGGAAGGGGGGAAGGGAATAAACCTCCAA
AAAGGGGGCGGGAAGGGTTCTTTGTTTATATAAAAAAAATAAA

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAATACTGTGATTCATTT
TCCTTACCCTGTAATATATATACTGTCTTCAAACTCATAGAAGGTTTTAT
AATAGAAAATATGCCATATTCAGAGAGGGTAACATCAGTTTGTTCATTCA
TTCATTGTGTATTGTTCTGGTCCTCTTATATAAGGATATGTAAGAACATG
TCCTGTGGGCCTGTTGTTCCTTATGGATCAGAGACATTCTTGTGCTCTCA
GAAGGAATTGAGAAAGAACTTCAGTTAAACTGTGAAGTCATCAATGTTTG
AAATACTGAGATCTACGAACTGAAGTTGAAGATTTAGTAGGGTCTTCTCA
GCTTTAGCTGATTTGTTCTGGAGGAGCTCAAGAGAAGTTTAAGGAAGAAA
CTTGGCTTTGAATCCTTGACTTGTAGCACAGCCCTATGTTTTACAGTCCA
GGTAGGCTCAGGAAGACCGTTACGTTAGTGTAAATATGGAGTGGAGTCGG
GCTAAGGTTTAAGAGGGTCAATCCATGGGGGTTTTGGGATTGCCGCCCTC
AATGGGCCGCCCCTCTTAAATTTCCAAAAAAAATGGGTTAAATTTTTCCT
AAAAGCTTGCTATGGCCTTGGGAATTTAAAAATTTTCCCTTATTAGCCCT
CTTCTACAACCGCGATAATCAAAACGAAAACTCTTAAAGGCTGGATCCCC
TGGTTTGACGCCCCTTTTTTTTTTTGTTTTGATTTCCCCTTCTCTCGTCA
TCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_h18.b1 MSMg01no350_h18.b1 CHROMAT_FILE:
MSMg01no350_h18.b1 PHD_FILE: MSMg01no350_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:25 2005
         (459 letters)



>mm_chr6_33405690_33406548
          Length = 859

 Score =  770 bits (398), Expect = 0.0
 Identities = 425/434 (97%)
 Strand = Plus / Minus

                                                                       
Query: 26  tgcattttcaaatcagcctctgacactgttcccattcgtcctaggaaggccagaagtctt 85
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 659 tgcattttcaaatcagcctctgacactgttcccattcgtcctgggagggccagaagtctt 600

                                                                       
Query: 86  gtaggagcccaccttgtgacgtcactgctttcactgcgctcacatccgtctccacacaga 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gtaggagcccaccttgtgacgtcactgctttcactgcgctcacatccgtctccacacaga 540

                                                                       
Query: 146 catcgagcacttttctagtatggaaagttgactacctccttctcctccagggagacctca 205
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 539 catcgagcacttttctagtatgaaaagttgactacctccttctcctccagggagacctca 480

                                                                       
Query: 206 gagattatcattcataggagataatacaagctttatgttatattataaagtcttttaaga 265
           ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 479 gagattatcattcataggagaaaatacaagctttatgctatattataaagtcttttaaga 420

                                                                       
Query: 266 tctactcatttttttcccatccctaggtccaatctttctcatacactcactttgaccaaa 325
           ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 419 tctactcatttttttcccatccctaggtctaatccttctcatacactcactttgaccaaa 360

                                                                       
Query: 326 ataaaatgtttataactgcagggcagtcccatatctgtggactcaggtacaaccactcca 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ataaaatgtttataactgcagggcagtcccatatctgtggactcaggtacaaccactcca 300

                                                                       
Query: 386 gagtgtagccaattaactacatttggtcactcaaactgccttggtcaggtggttaactaa 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 299 gagtgtagccaattaactacatttggtcactcaaactgccttggtcaggtggttatctca 240

                         
Query: 446 tttttaaccttaga 459
           ||||||||||||||
Sbjct: 239 tttttaaccttaga 226


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no350_h18.g1 MSMg01no350_h18.g1 CHROMAT_FILE:
MSMg01no350_h18.g1 PHD_FILE: MSMg01no350_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:25 2005
         (431 letters)



>mm_chr6_33246790_33247620
          Length = 831

 Score =  826 bits (427), Expect = 0.0
 Identities = 430/431 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaatactgtgattcattttccttaccctgtaatatatatactgtcttcaaactcatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaatactgtgattcattttccttaccctgtaatatatatactgtcttcaaactcatag 260

                                                                       
Query: 61  aaggttttataatagaaaatatgccatattcagagagggtaacatcagtttgttcattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggttttataatagaaaatatgccatattcagagagggtaacatcagtttgttcattca 320

                                                                       
Query: 121 ttcattgtgtattgttctggtcctcttatataaggatatgtaagaacatgtcctgtgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcattgtgtattgttctggtcctcttatataaggatatgtaagaacatgtcctgtgggc 380

                                                                       
Query: 181 ctgttgttccttatggatcagagacattcttgtgctctcagaaggaattgagaaagaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ctgttgttccttatggatcagagacattcttgtgctctcagaaggaactgagaaagaact 440

                                                                       
Query: 241 tcagttaaactgtgaagtcatcaatgtttgaaatactgagatctacgaactgaagttgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagttaaactgtgaagtcatcaatgtttgaaatactgagatctacgaactgaagttgaa 500

                                                                       
Query: 301 gatttagtagggtcttctcagctttagctgatttgttctggaggagctcaagagaagttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatttagtagggtcttctcagctttagctgatttgttctggaggagctcaagagaagttt 560

                                                                       
Query: 361 aaggaagaaacttggctttgaatccttgacttgtagcacagccctatgttttacagtcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggaagaaacttggctttgaatccttgacttgtagcacagccctatgttttacagtcca 620

                      
Query: 421 ggtaggctcag 431
           |||||||||||
Sbjct: 621 ggtaggctcag 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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