BAC Information

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BAC

Clone NameMSMg01-350J01
Chromosome6 (Build37)
Map Location 126,423,594 - 126,423,875
singlet/doubletsinglet
Overlap genenone
Upstream geneCd9, Vwf, Tmem16b, Ntf3, LOC100043565, LOC667427, LOC100043567
Downstream geneKcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350J01.T7 (MSMg01no350_j01.b1)MSMg01-350J01.TJ (MSMg01no350_j01.g1)
ACCAG462147AG462148
length737776
length of high quality
(start - end)
349 (84 - 432)295 (88 - 382)
definitionCHROMAT_FILE: MSMg01no350_j01.b1 PHD_FILE: MSMg01no350_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:32 2005CHROMAT_FILE: MSMg01no350_j01.g1 PHD_FILE: MSMg01no350_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCGCCGCTCCNNCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXGCCGCGGAATTCTCACCTTTCCAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGATTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTAAGAAACACTCCTCCATTGTTGGTGGGATTGCAGGATTGTA
CAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGT
ACTACCGGAGGATCCAGCAATATCTCTCCTGGCCACCTATCCAGAAGATG
CCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTA
TTTATAATACCCAGAACCTGGAAAGAACCCAGATGCCCCTCAATAGATGA
ATGTATACCGAATATGTGGTACATCTACACCACGTAGTACTACTCAGCTA
TTAAAAAGAATGAATTTATGAAATTCCTAATCTAACTGGATGGCACCGCC
ATGGCACCTACCTCGAACGAGGCTACCCCCTTCACTATTATATTTCCCTC
CCCTCGTACTTTCCTTGATAACTGGCATATTACTCTC
TGTTTTCGACGACCATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGCCTGATCT
TGGGGAAATCTCAGGGATTGGTGGGACTCTGTGGCCTGATCTTTAAGCTC
GGGGATTGGTAGGATTTTATACTCAGAGATTAATGGGTTTTTGTGTTCAG
GAACTGGAAAGTTTGGGTATGTGTTTTACCCAAAAGTGAGCAAAGACCCT
ACATCTTTGCAAGCACTATGGCTGCAGAGTAACCATATTTTTTTAGGACT
TTAAGATGTGGCTTCAAAGTGCCTCTTCTCTAGGCTGTTATTTTATTTAC
TTGTATATGTGGGAAGTATGCATGTCTAATTGTGTGAAGTGTGTTTGTAT
ATGTGCATGTGTGCGATGACGTTTTCTTTTCTCTCCACCTATTTTTTCGT
TCCGATCTTGTTCTCCTCCTACGTTTTTCCTTTTTTTTTATTCATTCTTT
CTTTACTTCTTGTCTATTTTTCCCTTCTTTTTTTTTCCGTTCTTTTTTTT
TTTCTTACTTTTTCCTTTTCTTTCCTTTTTCCCTTCTATCCTTTTCTCCC
TATCTCCTTCAATCCCCCTTCCCCCTTTCTCTCCTTCCTTTCTCTTTCTT
TTTCCCTCTTTCTCCTATTTCTACTCTCCGTCTTGATTCTTTTTTTTATT
TTCTTTTCACTTCTTCCCTCACTACTTCTTTGCGCTCCCCTTTCGCCTCT
CTTTCCTTTTTCTCATCTTCGTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_j01.g1 MSMg01no350_j01.g1 CHROMAT_FILE:
MSMg01no350_j01.g1 PHD_FILE: MSMg01no350_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:32 2005
         (295 letters)



>mm_chr6_126423384_126424078
          Length = 695

 Score =  431 bits (223), Expect = e-125
 Identities = 268/283 (94%), Gaps = 2/283 (0%)
 Strand = Plus / Plus

                                                                       
Query: 11  tcttggggaaatctcagggattggtg-ggactctgtggcctgatctttaagctcggggat 69
           |||||||||||||||||||||||||| || |||| ||||||||||||||||||| | |||
Sbjct: 211 tcttggggaaatctcagggattggtgagg-ctctatggcctgatctttaagctcagagat 269

                                                                       
Query: 70  tggtaggattttatactcagagattaatgggtttttgtgttcaggaactggaaagtttgg 129
           ||  ||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||
Sbjct: 270 tgacaggattttatactcagagattgatggggttttgtgttcaggaattggaaagtttgg 329

                                                                       
Query: 130 gtatgtgttttacccaaaagtgagcaaagaccctacatctttgcaagcactatggctgca 189
           |||||||||||||| | |||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 330 gtatgtgttttacctagaagtgagcaaggaccctacatctttgcaagcactctggctgca 389

                                                                       
Query: 190 gagtaaccatatttttttaggactttaagatgtggcttcaaagtgcctcttctctaggct 249
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 390 gagtaaccatatttttttaggactttaagatgtggcttcaaagtacctcttctctaggct 449

                                                      
Query: 250 gttattttatttacttgtatatgtgggaagtatgcatgtctaa 292
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gttattttatttacttgtatatgtgggaagtatgcatgtctaa 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)