BAC Information

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BAC

Clone NameMSMg01-351C11
Chromosome6 (Build37)
Map Location 76,305,965 - 76,306,491
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668143, EG668145, EG546907, LOC100042952
Downstream geneLOC668153, EG668155, LOC100042956, Ctnna2, Lrrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351C11.T7 (MSMg01no351_c11.b1)MSMg01-351C11.TJ (MSMg01no351_c11.g1)
ACCAG462593AG462594
length730748
length of high quality
(start - end)
520 (56 - 575)527 (86 - 612)
definitionCHROMAT_FILE: MSMg01no351_c11.b1 PHD_FILE: MSMg01no351_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:20 2005CHROMAT_FILE: MSMg01no351_c11.g1 PHD_FILE: MSMg01no351_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAGTATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTCAACTGATGAATACCCACTGGCTGAGAAGCACCT
AAAAAAGTGTTGAACATCCTTAATCATCAGGGAAATGCAAATCAAAAGAA
CTCTGAGATTCCACCTCACACCAGTGAGAATGGCTAAGACCAAAAACTCA
GGTGACAGTAGATGCTGGCGAGGATGTAGAGAAAGAGGAACACTCCTTCA
TTGCTGGTGGAATTGCAAGCTGGCAGAATTGCTTTGGAAATCAGTTTGGT
GGTTCCTCAAAAAATTGGACATAGTGCTACCTGAGGACCCAGCTATACCA
CTCCTGGGCATGTAACCAGAAGATGCTCCAACTCGTAATAAAGACACATG
CTCCACTATGTTCATAGCAGCTTTATTTATAATAGCCAGAAGCTGGAAAG
AACACAGATGTACTTCAACAGAGGAGTACAGAAAATGTGCTACATTTCTG
TAATGGGATCCCCAATGGAGGACTTAGAGAAAGGACTGAAGGAGTGGAAG
GGGTTTGCAACCCCATAGGAAGAACATCATCCAACCATAAACCCTATAGT
TACCAGGGATTAAACCACCAATACAGGAGTACACATGGAGACTACCATGG
CTCCAGCTGCATATGTAGCATCTATATGCTTTTTTGGGGGGGTGGAGCAT
CAGAAGGAAGAGACGGCCGGTCGCGGGGGG
NNNNNTTTACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTCTCATTGGCT
GATGCTCTGAAGGCCCATTTTCTCTTTCGCTAGTCCTATCATCCCATTTT
TCTTTCGTGTTGGTGTTAAAAATGTTCTGACAACACTACAGGAAGGCATT
CCTTCAGCTCATGATTCCTGTTTGCAGTCCGTCATTGTGGGGAAGCCAAG
GCAGTAGGAATTTGAAGCCGCCAGTAAAATCACATCTACGGCTAAAAGCA
GAGACAGGATGAATACATACATACCTATGGTCAGCGCACTCTCCCTTCTC
AATCAGTTCAAGACTCAAATCTGAATGCTGTCACCCACTTTTAGACTTGC
TTGGTAATCATCCTAATCCTCTGCAGATATACCCAAGGGTTAAGCTGACT
TAAGCAATCCATCATTGAGAATCTTTTCTCAGATAAATCTTGATTGTGTC
ATTGGCCACTGAAAGCAACTACCACACAAATACTGCAGTTGCTTCATCAA
AGCCTGAAAGAAGTCCCTAACTACAAGGGTTATGCCTTATTGTCTTTGTC
ATACTAAACTTCAGAAAAGAAGGGAATTACATAGGTGTGTGCAACCTTAG
GGGACTGTCATTTTAANGGCTACCATTAAGTAAAACTATATATGATAATT
ATTACCTATTATTATTTCTGCAAACAATAACATGTGTGTTGGACGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_c11.g1 MSMg01no351_c11.g1 CHROMAT_FILE:
MSMg01no351_c11.g1 PHD_FILE: MSMg01no351_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:20 2005
         (527 letters)



>mm_chr6_76305765_76306691
          Length = 927

 Score =  996 bits (515), Expect = 0.0
 Identities = 524/527 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttctcattggctgatgctctgaaggcccattttctctttcgctagtcctatcatccc 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 actttctcattggctgatgctctgaaggcccattttctccttcgctagtcctatcatccc 260

                                                                       
Query: 61  atttttctttcgtgttggtgttaaaaatgttctgacaacactacaggaaggcattccttc 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttttcttttgtgttggtgttaaaaatgttctgacaacactacaggaaggcattccttc 320

                                                                       
Query: 121 agctcatgattcctgtttgcagtccgtcattgtggggaagccaaggcagtaggaatttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctcatgattcctgtttgcagtccgtcattgtggggaagccaaggcagtaggaatttga 380

                                                                       
Query: 181 agccgccagtaaaatcacatctacggctaaaagcagagacaggatgaatacatacatacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccgccagtaaaatcacatctacggctaaaagcagagacaggatgaatacatacatacc 440

                                                                       
Query: 241 tatggtcagcgcactctcccttctcaatcagttcaagactcaaatctgaatgctgtcacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatggtcagcgcactctcccttctcaatcagttcaagactcaaatctgaatgctgtcacc 500

                                                                       
Query: 301 cacttttagacttgcttggtaatcatcctaatcctctgcagatatacccaagggttaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacttttagacttgcttggtaatcatcctaatcctctgcagatatacccaagggttaagc 560

                                                                       
Query: 361 tgacttaagcaatccatcattgagaatcttttctcagataaatcttgattgtgtcattgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgacttaagcaatccatcattgagaatcttttctcagataaatcttgattgtgtcattgg 620

                                                                       
Query: 421 ccactgaaagcaactaccacacaaatactgcagttgcttcatcaaagcctgaaagaagtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccactgaaagcaactaccacacaaatactgcagttgcttcatcaaagcctgaaagaagtc 680

                                                          
Query: 481 cctaactacaagggttatgccttattgtctttgtcatactaaacttc 527
           ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctaaatacaagggttatgccttattgtctttgtcatactaaacttc 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)