AGGGAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTTGTATTCTCTTTGAGGTAAAAGCTGTGTGCCTGC
ATGGACAATTGCATAGAGATAATTAATATATTAATGTATGTATAAATTTG
AGGGATGCACAGTTTCTTTTTTTTTTTGTTGTGAGCATTTGCTTTTTTAT
TAGTTTTTAAATTAGCATGTGAAGTAATGAGTTTTATTATGGCATCCTTA
TAACTACTTTGTTGATTTTCTGCTCCCATCCCCCTCTGCACCCACAATCC
TCACAGGCTGGTCTCTCCTCCCTTGCTCCATTAATTCCCCTTTCTTCCTG
TTCCTCTTTCTCTTCTTCTTCCTCTCCCTCTCCCTCTTCCTCCTCCTCTT
CTCCTTCTTTTTCCTTCTCCTTCTCTTCCTTCCTTCCTTTTTTTTTTTTT
TGAGAATGGGTCTTAAATAGATGCTGGCATCCTTATGTATCCAAGGCAAT
CACCACACTCCTGATTCACTTGCTTCTACTTTCCAGATGCTGGGATTGCA
GGACTGGGACACTATATTGACCGTCTAAGAATTTTAAATTATATTAATTA
ATTAATTTGTGNGTGTGCCATCAACATGGTCCCACATGTAAAAGGTCAGA
AGAATAAATTGCCAGGTTCTGGGCCACCTATCTTTAGGTCATCATCCCTT
TGGTAGTAAAGCGCCCTTTAACCTGCTGAATGCATTCCTGGGTGGCCCCT
AATG

NNNNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCTAGCTTGTTCTA
ACCAGTGAGTTCCAAGCCAGACAGAAATATTGAAGACACTTCTTTCAAAA
ATAAACACATAAATGAATAGAGCTGAAGAGATGGCTCAGTATCTAAGAGA
TGGCTCGGTGTCTAAGGACCTGGGTTTCCAATTCTCAGCATCTACATGGT
AGCTAATACTCATCTGTGACTTCAGTTCTCAGGACTCTGACACCCTCTTC
TGGCTTCACCAGGTACTAGGCAAGCGTATGGTACATAGAGGTACGTGAAG
CCAAAACACCTATACACATAGAAATAATGAAATAAATCTTTTAAAAACAT
GATTTAGAGCTTCAAGCTCTGCCTATCAGCTATCTTTTTGATGAGACTTT
ACCACACCATGTGTCTTAGTTAGGGTTTTACTGCTGTGAATAGACATCAT
GACCAAGGCAACTTTTATAAGGACAACATTGGAGCTGGCTTACAGGTTCA
GAGGTTCAGTCCATTGTCATCAATGCGGGAACATGGCAGCATCTAGGCAG
GCATGGTGCAGGCAGAGCTGAGAGTTCTACATCTTCATCTAANAGCTGCA
AGTGGAAGACAGCCTTTCAGGCAGTGAGAGTGAGGGTCTTATAGCCCACA
CCCACAGTGACACACCTACTTCCACAGGGCTGCACCTTTCTATAGTGCCA
CTCCC

Query= MSMg01no351_i03.b1 MSMg01no351_i03.b1 CHROMAT_FILE:
MSMg01no351_i03.b1 PHD_FILE: MSMg01no351_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:46 2005
         (519 letters)



>mm_chr6_37688654_37689573
          Length = 920

 Score =  799 bits (413), Expect = 0.0
 Identities = 460/489 (94%), Gaps = 23/489 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttgtattctctttgaggtaaaagctgtgtgcctgcatggacaattgcataga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gaattcttttgtattctctttgaggtaaaagctgtgtgcctgcatggacaattgcataga 430

                                                                       
Query: 65  gataattaatatattaatgtatgtataaatttgagggatgcacagtttc-tttttttttt 123
           |||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 429 gataatgaatatattaatgtatgtataaatttgggggatgcacagtttcatttttttttt 370

                                                                       
Query: 124 tgttgtgagcatttgcttttttattagtttttaaattagcatgtgaagtaatgagtttta 183
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgttgtgggcatttgcttttttattagtttttaaattagcatgtgaagtaatgagtttta 310

                                                                       
Query: 184 ttatggcatccttataactactttgttgattttctgctcccatccccctctgcacccaca 243
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttatggcatccttataactattttgttgattttctgctcccatccccctctgcacccaca 250

                                                                       
Query: 244 atcctcacaggctggtctctcctcccttgctccattaattcccctttcttcctgttcctc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 249 atcctcacaggctggtctctcctcccttgctccattaattcccctttcttcctgttcttc 190

                                                                       
Query: 304 tttctcttcttcttcctctccctctccctcttcctcctcctcttctccttctttttcctt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tttctcttcttcttcctctccctctccctcttcctcctcctcttctccttctttttcctt 130

                                                                       
Query: 364 ctccttctc------ttccttccttcctttttttttttttt----------------gag 401
           |||||||||      ||||||||||||||||||||||||||                |||
Sbjct: 129 ctccttctccttctcttccttccttccttttttttttttttttttttttttttttttgag 70

                                                                       
Query: 402 aatgggtcttaaatagatgctggcatccttatgtatccaaggcaatcaccacactcctga 461
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 69  aatgggtcttaaatagatgctggcatccttatgtatccaaggcaatcaccgcactcctga 10

                    
Query: 462 ttcacttgc 470
           |||||||||
Sbjct: 9   ttcacttgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 920
Length adjustment: 10
Effective length of query: 509
Effective length of database: 910
Effective search space:   463190
Effective search space used:   463190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)