Query= MSMg01no351_i06.b1 MSMg01no351_i06.b1 CHROMAT_FILE:
MSMg01no351_i06.b1 PHD_FILE: MSMg01no351_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:46 2005
(209 letters)
>mm_chr6_50902641_50903248
Length = 608
Score = 339 bits (175), Expect = 1e-97
Identities = 187/191 (97%), Gaps = 1/191 (0%)
Strand = Plus / Plus
Query: 16 gaattctgactgatttgactaaaaaccttctttcatctcattaggaggcaaatatccagt 75
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattctgactgatttgaataaaaaccttctttcatctcattaggaggcaaatatccagt 275
Query: 76 aatttcaacttctcgcttgatattatcattaaggttcagaatgggttgctattaaacatc 135
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aatttcgacttctcacttgatattatcattaaggttcagaatgggttgctattaaacatc 335
Query: 136 agcggtagaattcttaatactgatcatttaggcttaatgagtaaaaaaatattaatttca 195
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 336 agcggtagaattcttaatactgatcatttaggcttaatgagtaaaaaa-tattaatttca 394
Query: 196 ggttatataca 206
|||||||||||
Sbjct: 395 ggttatataca 405
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 608
Length adjustment: 9
Effective length of query: 200
Effective length of database: 599
Effective search space: 119800
Effective search space used: 119800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no351_i06.g1 MSMg01no351_i06.g1 CHROMAT_FILE:
MSMg01no351_i06.g1 PHD_FILE: MSMg01no351_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:47 2005
(495 letters)
>mm_chr6_50988900_50989785
Length = 886
Score = 855 bits (442), Expect = 0.0
Identities = 479/496 (96%), Gaps = 11/496 (2%)
Strand = Plus / Minus
Query: 1 catccgtcctcccttggactgccggtggtgtggcaagttgcagtttgcgaggccactttc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 catccgtccttccttggactgccggtggtgtggcaagttgcagtttgcgaggccactttc 627
Query: 61 taaaagcagttcacttcaacacgggtaaaacgactcttaagccagtttcttgtgcttcaa 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 626 taaaagcagttcacttcaacacgggtaaaatgactcttaagccagtttcttgtgcttcaa 567
Query: 121 ctga-tactgccaggcaagcgaacaggatgtgtgattctttcagtatgttggttaatttc 179
|| | ||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 566 ct-attactgccaggcaagcgaacaggatgtgtgattctttcagtatgtttg----tttc 512
Query: 180 tagtatgtttgtgtcttaagaaggaggaaatatatagtcgtcagaggaatagaaagaagc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tagtatgtttgtgtcttaagaaggaggaaatatatagtcgtcagaggaatagaaagaagc 452
Query: 240 ctgggcaaaggcctccaaggagtgacaattgtacctacggagcagagaaaggacagagct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 451 ctgggcaaaggcctccaaggagtgacaattgtacctacggagcagagaaaggacagatct 392
Query: 300 gcacagccacgcacagcacaaggctttttttttcttcatgttgcaacactgggctgtgtc 359
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 391 gcacagccatgcacagcacaaggc-----ttttcttcatgttgcaacactgggctgtgtc 337
Query: 360 ctacttctcaaagggatttatgggtcctcttagatttaattacaaatcacgtatgaaagt 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 336 ctacttctcaaagggatttatgggtcctcttagatttaattacaaatcatgtatgaaagt 277
Query: 420 ttcttgctgggtatttgaatgaagattatggtaattatccaactgagggtatgagaaagg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttcttgctgggtatttgaatgaagattatggtaattatccaactgagggtatgagaaagg 217
Query: 480 gtacaattcaagccag 495
||||||||||||||||
Sbjct: 216 gtacaattcaagccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 886
Length adjustment: 10
Effective length of query: 485
Effective length of database: 876
Effective search space: 424860
Effective search space used: 424860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
