BAC Information

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BAC

Clone NameMSMg01-352A04
Chromosome6 (Build37)
Map Location 110,844,756 - 110,845,139
singlet/doubletsinglet
Overlap geneGrm7
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352A04.T7 (MSMg01no352_a04.b1)MSMg01-352A04.TJ (MSMg01no352_a04.g1)
ACCAG463244AG463245
length800741
length of high quality
(start - end)
211 (54 - 264)384 (93 - 476)
definitionCHROMAT_FILE: MSMg01no352_a04.b1 PHD_FILE: MSMg01no352_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:23 2005CHROMAT_FILE: MSMg01no352_a04.g1 PHD_FILE: MSMg01no352_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAGCAGGGATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAAGGATCTCCCATAGAGCATCAGCCTTGGCAGCAAG
CACCCTCACCCTATTAAGCCATCTAACCAGCTTCCTGAAGCATTCCTTAC
TATAAGTGTTTTTGCTCAGCTACTGCAAAATTTTAAGAAAGGGAGAGAGA
AAGAAAGAGAGAAAGAGAGAGAGAAGGAAGAGGGGGAGGAGGAAGAGGAA
GAGGAAGGAGGTTTATTNGNNTTGTNGGGGTGGTTTGTTGTTGTGTTGTG
GTGGCGGGGGGTGTGGGGTGGGGGTTTTTTTTTTTTTTGNGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGNGTGTGTTTCTCCTTCCGCTCCCCTTGTT
CCTCGTTTCCGTTCCTTTGCTTGGTTTGGGGGCCTCCCCCCCCTCCTCTT
TCCTCCTTCCTCCCGTTCCTCCTTGTCTCCCCTTTCCCCTCGTTCCTTTC
TCCCCCGTTTCGTGTTTGTCTCTCGTTCCCCCCTGGCCGTTTTCGTTGCG
TTTTTCTTTTCTCTTGCGCGCGGTCGTTCCCCCCGTCTTGTCGCTCGTGT
TTTTTTTCCTTCCCCCTTCGGCCCCCCTTCGGGCTGGTGCCCCTGCCCGT
CCCCCCTCCTTTCCGCCTCCTCATCCTTCGCCCTCCGTTTGCCCGCCCCG
TCGTGTTTGCCCTTTCCTCGTTCCCGCCCCCGCTTTTATATTTTTCGCCC
CTCCCCTAACCGTGCTTTTGTTGCGCTGATTACCCACACCTCTGCCCCTT

NAATGAATTCNNNCGGCTCAATGATATGGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACCTTAT
GCTGAAGATTCTTTTAAAATGAGTTAGTACCATGTAGGTTTAATATGCAT
CCATGGAGCTGACCATTTTAATCCACACCTAAAAACCTACCACACAGGAG
GTAGAACTATGGGGATGGTAAATATAAGGCCATTTAAATCTGTGTTTTAA
AACTCTGTCAAACAAGGAAAGGAATAATTAATGCAAAGATTGTTTGCTTC
CAACTTTTGTGGGATAGCATTTGAAATGTAAATGAATAAAATATCTAATA
AAAATTAATACATAAAAAAGAAAATATTATGGTAAGTTATTGAACCCTAT
GGGTTTTTTCCCATCATAATAGTCTTCTGTATATTCAAAAGATAAATCAC
TTTATCTACATCATTTAATGAATTANAAAATCATATTCAATGTTTGGATA
AATAATTTATTGGTTAATATCCTTTACTATTCTGGAAGAAGACTTCTGGT
TCAGTTTCCAAAACATATAAATTCGATCCTTGCCCTGGCAAAAGCCAATC
TCTATAGGTTCCAAATGCAACACTTTCTACTGGCTTTAAAAAATTTCCCC
GGCGGAGCGTTGGTCAAATCCCCCTTTTAAGGGCGTATTTAATATAAAAA
CCCCCTGGTTTCTNTTTTACCCCTTCTATAACCTTGCGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_a04.g1 MSMg01no352_a04.g1 CHROMAT_FILE:
MSMg01no352_a04.g1 PHD_FILE: MSMg01no352_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:24 2005
         (384 letters)



>mm_chr6_110844730_110845513
          Length = 784

 Score =  621 bits (321), Expect = 0.0
 Identities = 369/385 (95%), Gaps = 3/385 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccttatgctgaagattcttttaaaatgagttagtaccatgtaggtttaatatgcatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 410 aaccttatgctgaagattcttttaaaatgagttagtaccatgtaggtttaagatgcatcc 351

                                                                       
Query: 61  atggagctgaccattttaatccacacctaaaaacctaccacacaggaggtagaactatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atggagctgaccattttaatccacacctaaaaacctaccacacaggaggtagaactatgg 291

                                                                       
Query: 121 ggatggtaaatataaggccatttaaatctgtgttttaaaactctgtcaaacaaggaaagg 180
           ||||||| | ||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 290 ggatggtgagtataaggccatttaattctatgttttaaaactctgtcaaacaaggaaagg 231

                                                                       
Query: 181 aataattaatgcaaagattgtttgcttccaacttttgtgggatagcatttgaaatgtaaa 240
           ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 230 aataattaacgcaaagattgtttgcttccaacttttgtgggataacatttgaaatggaaa 171

                                                                       
Query: 241 tgaataaaatatcta-ataaaaattaatacataaaaaagaaaatattatggtaagttatt 299
           | ||||||||||| | |||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 170 taaataaaatatc-acataaaaatgaatacataaaaaagaaaatgttatggtaagttatt 112

                                                                       
Query: 300 gaaccctatggg-ttttttcccatcataatagtcttctgtatattcaaaagataaatcac 358
           |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 111 gaaccctatgggattttttcccatcataatagtcttctgtatattgaaaagataaatcat 52

                                    
Query: 359 tttatctacatcatttaatgaatta 383
           |||||||||||||||||||||||||
Sbjct: 51  tttatctacatcatttaatgaatta 27


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)