BAC Information

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BAC

Clone NameMSMg01-352G17
Chromosome6 (Build37)
Map Location 5,855,672 - 5,855,958
singlet/doubletsinglet
Overlap geneDync1i1
Upstream genePpp1r9a, Pon1, Pon3, Pon2, Asb4, Pdk4
Downstream geneSlc25a13, EG667462, EG667468, LOC667471, LOC100040096, Shfm1, LOC545826, Dlx6as, Dlx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352G17.T7 (MSMg01no352_g17.b1)MSMg01-352G17.TJ (MSMg01no352_g17.g1)
ACCAG463551AG463552
length764809
length of high quality
(start - end)
32 (79 - 110)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no352_g17.b1 PHD_FILE: MSMg01no352_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:57 2005CHROMAT_FILE: MSMg01no352_g17.g1 PHD_FILE: MSMg01no352_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACCAAAAATCGCGGCCCTAAACGACTACTATTCCAAAAAAACCGCGGAA
TTCCTTTGCACCTAAAAAACCAAGTCTAGTGACCATAAACCTGACAGCTG
AATTTTTGTTTGTTTCCCTCCGCCTGCATGCTTGTTTTTCCCTTCGACAT
GATCCACCCACCACACAAACCACCCAAAACCTAACACCACCAAACACCCC
CACACCAACAATAACCCCCACCCCCCAACACACCCAAACCACCCCATAAA
ACCCCCCCCCCACTTCCCACCCCTTCCCCACCACACCCAAACCCACCCAC
CCCTAAACTTTCCTTCCAACCCACACCAAACACACACCCCAACCCCCCCC
CCCCCCCCCCAACAACCAACCCCAAACACAAAACACAAAAAAAACACACC
CCCCACAACACACAAACAAACATACAAACAAAACACACCACACAACACAC
TCCCCCCCCCCCCACAACACAACACAAACACACACCCAACCCCCCACCCA
AAACAAACCCCCAACCAAAAACCCCAACACCAACCCCCAACAAAATTAAA
AAACCCAAACCACAAACCCCCCCCACCACACCACATCACAAACCCCCAAA
CAACCAAAAACCCCACCACCCCCAAAATAAAACCCCCCCAACAAACTCCA
ATCAATCCCCCCAACCCCCCCAAAAAAAACCAAATCCACCCCATCCCCAA
CCCACACCACCACCAACCCCAACCCAAAACACCACCCCCCAAAAACCACA
CCCAACCTCAAACG
CCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGGCCTTGCAATTACTACGAAAAA
AAAAAAAGTTCTACCATTGAACTAACTCCCCAGTGTTAGTAACTGTTATC
ACTGAGATATGTGGTTAGTTGTCCTAGCACGTGCATAGTTGTGGAAGAAC
CCTTTAGTCAGTAGAATAATGATTGCTGTTACTGTTTCTATGTAAAGCAT
TTATAAAACTTCAGAACTATTTTTGGTTGCGAGCCTAGCCTTTAACAGCT
GAGCCATCTCTCCAGCCCATGGGGAACGCCAGGGCCAAGAAGTGGGAGTG
GGTGGGTAGGGGAGNTTNNNNTNNNNTTTTTTNNNTTTNTTTTTTTTTTT
TTTTTTTTNTTTTNTNTTTNTTTTTTNTTTTTTTCTNTTTTTTTTTTTTT
TTTTNTTTTTTTTTTTTTTNTTTNNTTTTTTTTTTTTTTNTTTTTTTTTT
TTTTTTTTTTTTTNNTTTTTTTTCNTTTTTTTTNTTTTTTTTTTTTNTTC
TTTTTTNTTNTTTTTTTTTTTTTCTTTTTTTTTTNCCTTTTTCCNTTCCC
TTCCTTTTCTCCTTTTTCCTTTTCCCCTTTTTCTTTTCCCCTTTTTCTCT
CTCTTCTCCCTCTTTTTCTCTTCTTTTCTTTTTTTTTCCCCTTCCCCTNT
CTTTTCTCTTCTTTCCTTTTTCCCCTCTTCTTNCCTCCCCTCTTTTTTCT
TCCCTTTTCCCTCTCCCTTTTTTTCCTCTCTTCCCCCTTTCTCCTTCCCC
TTTCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_g17.g1 MSMg01no352_g17.g1 CHROMAT_FILE:
MSMg01no352_g17.g1 PHD_FILE: MSMg01no352_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:57 2005
         (292 letters)



>mm_chr6_5855527_5856216
          Length = 690

 Score =  478 bits (247), Expect = e-139
 Identities = 278/291 (95%), Gaps = 6/291 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggccttgcaattactacgaaaaaaaaaaaa--gttctaccattgaactaactccccag 58
           |||||||||||||||||| |    ||||||||  ||||||||||||||||||||||||||
Sbjct: 432 agggccttgcaattactatg----aaaaaaaattgttctaccattgaactaactccccag 377

                                                                       
Query: 59  tgttagtaactgttatcactgagatatgtggttagttgtcctagcacgtgcatagttgtg 118
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 376 tgttagtaactgttatcactgagatatgtggttagttgtcctagcatgtgcagagttgtg 317

                                                                       
Query: 119 gaagaaccctttagtcagtagaataatgattgctgttactgtttctatgtaaagcattta 178
           |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 316 gaagaaccctttagtcagtagaatgatgattgctgttactgtttctatgtagagcattta 257

                                                                       
Query: 179 taaaacttcagaactatttttggttgcgagcctagcctttaacagctgagccatctctcc 238
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 256 taaaacttcagaactatttttggttgtgagcctagcctttaacggctgagccatctctcc 197

                                                              
Query: 239 agcccatggggaacgccagggccaagaagtgggagtgggtgggtaggggag 289
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 agcccatggggaacgccagggccaagaagtgggagtgggtgggtaggggag 146


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 690
Length adjustment: 9
Effective length of query: 283
Effective length of database: 681
Effective search space:   192723
Effective search space used:   192723
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)