BAC Information

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BAC

Clone NameMSMg01-352L06
Chromosome6 (Build37)
Map Location 111,731,427 - 111,883,140
singlet/doubletdoublet
Overlap genenone
Upstream geneGrm7
Downstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352L06.T7 (MSMg01no352_l06.b1)MSMg01-352L06.TJ (MSMg01no352_l06.g1)
ACCAG463764AG463765
length766768
length of high quality
(start - end)		273 (51 - 323)409 (83 - 491)
definitionCHROMAT_FILE: MSMg01no352_l06.b1 PHD_FILE: MSMg01no352_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:20 2005CHROMAT_FILE: MSMg01no352_l06.g1 PHD_FILE: MSMg01no352_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,731,427 - 111,731,695)(111,882,732 - 111,883,140)
sequence
NCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAATCAGTTACCCCCTGTTCTGTTTGATCTTCTGAAACTCT
TCATGTCTCCTTATACGTCTAAGTTGTTGAGATGTAGTAATATGGACATT
ATGAAGTCTAGGTAGCCATTTGGACACAAGTTATTGTAAAAGGGTGCCGT
TTTATACTTAAATTTGGGGGAGATGTTAGATTGCTGTTATTTCGCCCTCC
TAGGAATGAAAATCAGAGCTTAATGCATGGGAGGCAAGAGCTCTACCACT
GAGCTATGTTTCTAGCCCTCACCTTGTGTTTGACGGCCTTAGAAAAGGAA
GATGATACGGGTTTGTGGAACTTAGTGTATAAAAGTATTGTGCTTGATTA
TTGAGGTCAGCCACTGGCGACCCCATACTACACACTGTTACTATGACTAT
CCCACTAAATATTACCCTTTAAATTTTGAATACGAGACTATTCTGTATCT
CTGCGACACAGACTTCTTCTGTGACTCTGTCACCAGCTAATCTCATTTGT
CTTTGGGTATTCTAATGCTTCCTCCATCCCGTTATTTCCCATTCCCTTCC
CCCCATTTTTTTATTCTGGTTTGGCATTCTCTTGTTTCCTTCTTTTTCCC
TCTTTGCTTTTTTTTTTTTCCCTTTTTGCTGTTTTACCCCCCCCCTTCTT
TTCTTTCTTTCTCTCTTCCCTTCCCTCCTCTCTCTTCTCCCTCTTCTGTC
TTCCTTTTCTTACTCG

NNNNGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGAGCTAAAACAATAA
AAAAAGAGATTCTTTTAAGTGAATGGCAGAAAATGTCTGATAGCATCTGA
CTTTCGGGTTGTCTTCCGATCTGTTCTCCCCACCTCCTGACTCCATGTTG
TTTCTTCCTCACAAATAGATGCCCTAGCTTTGTCCCAGCATGTCCCCATA
TTTGGGGCTGACTATTGAATACATATTCATGCCTCATTTTAGCTGCCAGC
ATTGGGAGTCTGCAGAAGCTGTAAATGTGACCTGAACAAAGAAGCAGTTT
GATCACAGGGCTCACAACTGCAGCTCTGTGTGTCACCTCATCAGAGAGCC
AACCTTTAGATTCCCTTTCAGAGCCTGCCCCACGGGCAAAGCAGATGCCA
ACTCACACGCCTCACAGACAGCTGATAGCTCATGGTGCCAGTCTCCTCGG
GACTGCTAACCCATATTATAGAAAGTAAACTGTTCATGTCTAGTGATACC
ATAATAGAACACATAGCATATCATGGGGCTGCTTATGCATTAACTTCATA
AAGTTGCCGACCCCCGGTTCTTCCTCTTTTTTCTCCTTTCGCCTTTTTTT
CCTACTTTTATTCTGCTATTTTTTTGTCTCCGCCTCCTCCTCTTTCCTTC
TTCCATTTCTTTCCCCCCCTCTTTTTTTATTCCCCCTTTCCTTTCATTCC
CTTTTTCCTTATTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_l06.b1 MSMg01no352_l06.b1 CHROMAT_FILE:
MSMg01no352_l06.b1 PHD_FILE: MSMg01no352_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:20 2005
         (273 letters)



>mm_chr6_111731223_111731895
          Length = 673

 Score =  497 bits (257), Expect = e-145
 Identities = 266/269 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatcagttaccccctgttctgtttgatcttctgaaactcttcatgtctccttat 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatcaggtatcccctgttctgtttgatcttctgaaactcttcatgtctccttat 264

                                                                       
Query: 65  acgtctaagttgttgagatgtagtaatatggacattatgaagtctaggtagccatttgga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acgtctaagttgttgagatgtagtaatatggacattatgaagtctaggtagccatttgga 324

                                                                       
Query: 125 cacaagttattgtaaaagggtgccgttttatacttaaatttgggggagatgttagattgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 cacaagttattgtaaaagggtgccgttttatacttaaatttgggggagatgttaggttgc 384

                                                                       
Query: 185 tgttatttcgccctcctaggaatgaaaatcagagcttaatgcatgggaggcaagagctct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgttatttcgccctcctaggaatgaaaatcagagcttaatgcatgggaggcaagagctct 444

                                        
Query: 245 accactgagctatgtttctagccctcacc 273
           |||||||||||||||||||||||||||||
Sbjct: 445 accactgagctatgtttctagccctcacc 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no352_l06.g1 MSMg01no352_l06.g1 CHROMAT_FILE:
MSMg01no352_l06.g1 PHD_FILE: MSMg01no352_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:21 2005
         (409 letters)



>mm_chr6_111882532_111883340
          Length = 809

 Score =  783 bits (405), Expect = 0.0
 Identities = 408/409 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgagctaaaacaataaaaaaagagattcttttaagtgaatggcagaaaatgtctgata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 actgagctaaaacaataaaaaaagagattcttttaagtgaatggcagaaaatgtctgata 550

                                                                       
Query: 61  gcatctgactttcgggttgtcttccgatctgttctccccacctcctgactccatgttgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gcatctgactttcgggttgtcttccgatctgttctccccacctcctgactccatgttgtt 490

                                                                       
Query: 121 tcttcctcacaaatagatgccctagctttgtcccagcatgtccccatatttggggctgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tcttcctcacaaatagatgccctagctttgtcccagcatgtccccatatttggggctgac 430

                                                                       
Query: 181 tattgaatacatattcatgcctcattttagctgccagcattgggagtctgcagaagctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tattgaatacatattcatgcctcattttagctgccagcattgggagtctgcagaagctgt 370

                                                                       
Query: 241 aaatgtgacctgaacaaagaagcagtttgatcacagggctcacaactgcagctctgtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaatgtgacctgaacaaagaagcagtttgatcacagggctcacaactgcagctctgtgtg 310

                                                                       
Query: 301 tcacctcatcagagagccaacctttagattccctttcagagcctgccccacgggcaaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tcacctcatcagagagccaacctttagattccctttcagagcctgccccacgggcaaagc 250

                                                            
Query: 361 agatgccaactcacacgcctcacagacagctgatagctcatggtgccag 409
           ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 249 agatgccaactcacacgcctcacagacagctgacagctcatggtgccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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