NNNTTTTATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGGGCAGATACCAGTCATTGCCTCTGTTGTGTACCAAA
CAATGAGGTCACCAGCTTTCAGTGGACACTTCCAACTCCATGGCTGCATA
ACGATATTACATAATATCAGAGGATCACAACTGAAAAACACACACACACA
CACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAATAATGAATGTAGAAAAAGTGACATGTTGATAGTAAAACAGA
ATGTATTTATACATGTATGAAATTGCCAAAAAGAAATTTAATTGACGGGG
GTGGGGGGAGAAGCTGAAGATGAATTATGACCACTCTAACGGAATATTAA
GCTTTTCAGTGCTAACAACTGACAATAGTTGTTAGGAGAGAAATTAACAC
CACAGTGGGTTACGATTCATGCTTCATGGTTAGAAAATTTATTCATAATG
TGGATTAATGCTAACATGCTGATGTTTTCTAAGCTAATGCAAAGATGATG
GCCAGGTAAGGATCAATGAAAGCAGCGTCTCTATTTTACAATTGTCAATT
TGATTCCAAATCACTGGTTAGTTCTGCTTGGGAAACAGGGTCATTATGAA
CAATCAGAGAGCCCAGTTATTAGTAACAGACATTTTCAGGGTCAGAGCTG
ATGGGTAAGAGCAATGTTCCTGTGCT

TGCTCCCTTTNTTTTTCNNNNNNNNNNNCCCNNNNNNNTCCATGCTAXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTGTTTTTACCTCCCACACTAGATAACAGGTGGGCCA
CATACCTGTNTTAGANATATACTTGGGGAATTCTGGGTGCCCTTCATTGG
TCTGGGTCTTCCATTCTGTACAACATCACTTTAGCCATGAGCTGCTTTCA
GAACTACTTTTGGTTATTCTTTTTGGACAGGATCTTATCCTTTAGCCAGG
GGGCCTAAATTCACCCCCTGGCTTTGGAGGGCCCATGAAACCTTTTCCCC
CTTTGCGCCAAGGGGGAAAAGCATTTCCCGGGGGACCTAGGGAAAACACC
AAATTTCCGGGGTTGGCGCTTTTTGGTTTTTTTCTTCCCCCGGGGAGAAA
AATTTTCCACCACGGGGGGGTTTTCTTGGGGGGCCTCCACTCTTTTTTTT
AAAAAGGGGGGTGGGGAAAAAAAAAAACACAACACCTTTTTTTTTTGTTT
GGGGGCCTTCTTTTTTTTTTCCCAAAGGGGATTTCTTTCCGGGGGGGGCC
CTCTTTTTTTTTTTCCTTCCAACAAAAATGGGCGGGGGGGGGCGGCAAAA
AAAAGGCACAACTTTTTTTTGTGGGGC

Query= MSMg01no353_a02.b1 MSMg01no353_a02.b1 CHROMAT_FILE:
MSMg01no353_a02.b1 PHD_FILE: MSMg01no353_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:44 2005
         (668 letters)



>mm_chr6_102999219_103000288
          Length = 1070

 Score = 1125 bits (582), Expect = 0.0
 Identities = 634/668 (94%), Gaps = 29/668 (4%)
 Strand = Plus / Minus

                                                                        
Query: 4    ggaattctgggcagata-ccagtcattgcctctgttgtgtaccaaacaatgaggtcacca 62
            ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 ggaattctgggcagaaaggcagtcattgcctctgttgtgtaccaaacaatgaggtcacca 989

                                                                        
Query: 63   gctttcagtggacacttccaactccatggctgcataacgatattacataatatcagagga 122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988  gctttcagtggacacttccaactccatggctgcataacgatattacataatatcagagga 929

                                                                        
Query: 123  tcacaactgaaaaacacacacacacacacacacagagagagagagagagagagagagaga 182
            |||||||||||||||||| ||||||||||||||                          |
Sbjct: 928  tcacaactgaaaaacacatacacacacacacac--------------------------a 895

                                                                        
Query: 183  gagagagagagagagagagagagaataatgaatgtagaaaaagtgacatgttgatagtaa 242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894  gagagagagagagagagagagagaataatgaatgtagaaaaagtgacatgttgatagtaa 835

                                                                        
Query: 243  aacagaatgta-tttatacatgtatgaaattgccaaaaagaaatttaattgacgggggt- 300
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 834  aacagaatgtattttatacatgtatgaaattgccaaaaagaaatttaattgacggggttg 775

                                                                        
Query: 301  ggggggagaagctgaagatgaattatgaccactctaacggaatattaagcttttcagtgc 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774  ggggggagaagctgaagatgaattatgaccactctaacggaatattaagcttttcagtgc 715

                                                                        
Query: 361  taacaactgacaatagttgttaggagagaaattaacaccacagtgggttacgattcatgc 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 714  taacaactgacaatagttgttaggagagaaattaacaccacagtgggttacgtttcatgc 655

                                                                        
Query: 421  ttcatggttagaaaatttattcataatgtggattaatgctaacatgctgatgttttctaa 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654  ttcatggttagaaaatttattcataatgtggattaatgctaacatgctgatgttttctaa 595

                                                                        
Query: 481  gctaatgcaaagatgatggccaggtaaggatcaatgaaagcagcgtctctattttacaat 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594  gctaatgcaaagatgatggccaggtaaggatcaatgaaagcagcgtctctattttacaat 535

                                                                        
Query: 541  tgtcaatttgattccaaatcactggttagttctgcttgggaaacagggtcattatgaaca 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534  tgtcaatttgattccaaatcactggttagttctgcttgggaaacagggtcattatgaaca 475

                                                                        
Query: 601  atcagagagcccagttattagtaacagacattttcagggtcagagctgatgggtaagagc 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474  atcagagagcccagttattagtaacagacattttcagggtcagagctgatgggtaagagc 415

                    
Query: 661  aatgttcc 668
            ||||||||
Sbjct: 414  aatgttcc 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1070
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1060
Effective search space:   697480
Effective search space used:   697480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)