BAC Information

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BAC

Clone NameMSMg01-353B21
Chromosome6 (Build37)
Map Location 102,626,103 - 102,784,347
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666084, Cntn3, EG666123
Downstream geneChl1, LOC666141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353B21.T7 (MSMg01no353_b21.b1)MSMg01-353B21.TJ (MSMg01no353_b21.g1)
ACCAG464074AG464075
length765788
length of high quality
(start - end)		605 (52 - 656)442 (83 - 524)
definitionCHROMAT_FILE: MSMg01no353_b21.b1 PHD_FILE: MSMg01no353_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:53 2005CHROMAT_FILE: MSMg01no353_b21.g1 PHD_FILE: MSMg01no353_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,783,747 - 102,784,347)(102,626,103 - 102,626,544)
sequence
NNNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCAATACTATGCAAGTCATTTCACATGGGTTTCTTAAGG
AACAGTAACCCTGTGACACAGTAACTGCCATTACCCACATTTGTCTAGTG
AATGGGAACAGTTAAAATGTCTGCCACACATTTAAAACTATTGGCTAACA
CTGGAGAAGATACATTGGGCATAATTGATATTAGGTATATCAAAGACACT
CCAGGGCAGGCCTCATGCTCAGGAGTTGATGGTCCACACAAATCAGACTC
TATGTTGTTACTGTTGCTTCTTTTAAATAAGAGAAAAAAATGTAGTTGCA
TGAGTAAGGAATATGTAGAAGCCTGGGAGAAGTTGAAAGGATATGGTTAA
AATATACTGTGTGATATTCTCAAAGAATTAAATTTTAAAACATAAAATAA
GCCTAAGACATTTTACATGCTCATTATAACTTTACAGAAGCTTAATATTT
GACTAGACATTTGCTTATGAAATGTCCTTCAGATGTGAGGTTAGACACAC
TTAAGTCAGCTCATTATTCGCAGATTTCTCTCTTGAGTTCTCACATTCTA
TTCTTCCAAATGACTCCCAAAGAAATCAATGTTTAAAAAGCAATCAATAC
TTTTTGTTACACTTAGGATAACCTCTTAAATTTTGTTTTGAATATGTCTA
TTCAAGATGAAATGTTTTGAATTGTTGCAANGTTTCATGATCCTAATACT
GATCTATGAAAAGAC

NNNNCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGGGAGTAAAGGTAT
ACAGGAGGAGATGAGGGAGAGAGAAAGTACTGAAAGTGATATAAATAGAG
TGCACTTATATACAACATTCTAAGTAAAAATTAAAAATATTTTAAGGGAT
GCACATATTGAGGTTGCTTAGTAAGTAAAGGTACATGCCACTCAGTTTGA
AAACCTGATCAATACAAGGGATGTGTTGAGTTCCAAATACAGTATCTACA
TAATAGAAGGAGAAAGCCAAGTCTTTCAAGTTGTCCTCTGACCTCCATAC
ATGATATGTGGGATGTGTGACCCTCCCAAATAAATAATAACTGTAAAAAA
TGAAAGTAGTTCAATTCCCATGACTGTTTTAGTCACCTTAGACATTTTGC
ATATTATATACTTTGCACATATCATAAAGTAGTTCTTATCTTTATTTAAA
ATCATGATGTTTGTGAAAGCTGCATTTACATTTTTTAAAAACACATTGTT
AAAGAGGCATACAGTGCAAATACATTCTTTACATAGTGGGAATAATTGCA
TTTTCCGAAAATTTGCCATTTTTGAACCCTTATGGGGTCTACCTTAAACA
CTTTATATGGATTATGAACACCACTTTTTCCCCCGGAAAACCCCATTTTT
CCAAATCCCTCCCTTTCCCTCCACCAACATCCCTTTTTCGTAGAAACAAC
TTTTCTACTTCCCTAATCCGTGTGGTTCTCCCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_b21.b1 MSMg01no353_b21.b1 CHROMAT_FILE:
MSMg01no353_b21.b1 PHD_FILE: MSMg01no353_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:53 2005
         (605 letters)



>mm_chr6_102783543_102784547
          Length = 1005

 Score = 1147 bits (593), Expect = 0.0
 Identities = 599/601 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccaatactatgcaagtcatttcacatgggtttcttaaggaacagtaaccctgtg 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaattcccaatactaagtaagtcatttcacatgggtttcttaaggaacagtaaccctgtg 746

                                                                       
Query: 65  acacagtaactgccattacccacatttgtctagtgaatgggaacagttaaaatgtctgcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acacagtaactgccattacccacatttgtctagtgaatgggaacagttaaaatgtctgcc 686

                                                                       
Query: 125 acacatttaaaactattggctaacactggagaagatacattgggcataattgatattagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acacatttaaaactattggctaacactggagaagatacattgggcataattgatattagg 626

                                                                       
Query: 185 tatatcaaagacactccagggcaggcctcatgctcaggagttgatggtccacacaaatca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatatcaaagacactccagggcaggcctcatgctcaggagttgatggtccacacaaatca 566

                                                                       
Query: 245 gactctatgttgttactgttgcttcttttaaataagagaaaaaaatgtagttgcatgagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gactctatgttgttactgttgcttcttttaaataagagaaaaaaatgtagttgcatgagt 506

                                                                       
Query: 305 aaggaatatgtagaagcctgggagaagttgaaaggatatggttaaaatatactgtgtgat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaggaatatgtagaagcctgggagaagttgaaaggatatggttaaaatatactgtgtgat 446

                                                                       
Query: 365 attctcaaagaattaaattttaaaacataaaataagcctaagacattttacatgctcatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attctcaaagaattaaattttaaaacataaaataagcctaagacattttacatgctcatt 386

                                                                       
Query: 425 ataactttacagaagcttaatatttgactagacatttgcttatgaaatgtccttcagatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataactttacagaagcttaatatttgactagacatttgcttatgaaatgtccttcagatg 326

                                                                       
Query: 485 tgaggttagacacacttaagtcagctcattattcgcagatttctctcttgagttctcaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaggttagacacacttaagtcagctcattattcgcagatttctctcttgagttctcaca 266

                                                                       
Query: 545 ttctattcttccaaatgactcccaaagaaatcaatgtttaaaaagcaatcaatacttttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctattcttccaaatgactcccaaagaaatcaatgtttaaaaagcaatcaatacttttt 206

            
Query: 605 g 605
           |
Sbjct: 205 g 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_b21.g1 MSMg01no353_b21.g1 CHROMAT_FILE:
MSMg01no353_b21.g1 PHD_FILE: MSMg01no353_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:53 2005
         (442 letters)



>mm_chr6_102625903_102626744
          Length = 842

 Score =  832 bits (430), Expect = 0.0
 Identities = 439/442 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagggagtaaaggtatacaggaggagatgagggagagagaaagtactgaaagtgatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagggagtaaaggtatacaggaggagatgagggagagagaaagtactgaaagtgatat 260

                                                                       
Query: 61  aaatagagtgcacttatatacaacattctaagtaaaaattaaaaatattttaagggatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatagagtgcacttatatacaacattctaagtaaaaattaaaaatattttaagggatgc 320

                                                                       
Query: 121 acatattgaggttgcttagtaagtaaaggtacatgccactcagtttgaaaacctgatcaa 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 acatattgaggttgcttagtaagtaaaggcacatgccactcagtttgaaaacctgatcaa 380

                                                                       
Query: 181 tacaagggatgtgttgagttccaaatacagtatctacataatagaaggagaaagccaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacaagggatgtgttgagttccaaatacagtatctacataatagaaggagaaagccaagt 440

                                                                       
Query: 241 ctttcaagttgtcctctgacctccatacatgatatgtgggatgtgtgaccctcccaaata 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttcaagttgtcctctcacctccatacatgatatgtgggatgtgtgaccctcccaaata 500

                                                                       
Query: 301 aataataactgtaaaaaatgaaagtagttcaattcccatgactgttttagtcaccttaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataataactgtaaaaaatgaaagtagttcaattcccatgactgttttagtcaccttaga 560

                                                                       
Query: 361 cattttgcatattatatactttgcacatatcataaagtagttcttatctttatttaaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattttgcatattatatactttgcacatatcataaagtagttcttatctttatttaaaat 620

                                 
Query: 421 catgatgtttgtgaaagctgca 442
            |||||||||||||||||||||
Sbjct: 621 tatgatgtttgtgaaagctgca 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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