BAC Information

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BAC

Clone NameMSMg01-353J18
Chromosome6 (Build37)
Map Location 90,037,626 - 90,038,003
singlet/doubletsinglet
Overlap genenone
Upstream gene4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2
Downstream geneV1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353J18.T7 (MSMg01no353_j18.b1)MSMg01-353J18.TJ (MSMg01no353_j18.g1)
ACCAG464445AG464446
length767755
length of high quality
(start - end)		431 (52 - 482)378 (82 - 459)
definitionCHROMAT_FILE: MSMg01no353_j18.b1 PHD_FILE: MSMg01no353_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:32 2005CHROMAT_FILE: MSMg01no353_j18.g1 PHD_FILE: MSMg01no353_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAATTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTATTGAGGAATACTGAAGGGCTGAGAAGCACTTGAAA
AAATGTTCAACATCTTTAATCATCAAAACAACCCTGAGATTCCAACTCAC
ACCAGTCAGAAAGGATAGGATCAAAAGTTCAGGTGACAGCAGATGCTGGT
GAGGATGTGGAGAAAGAGGAACACTTCCTCCATTGCTGGTGGGATTGCAA
GCTTGTACAACCACTCTGGAAATCTGTCTGGTGGTTCCTCAGAAAACTGG
ACATAGTACAGGTAGATCCAGCAATACCCCTCCTGGGCATATACCCAGAA
GATGTTCCAACTTGTAATAAGGACACATGCTCCACTATGTTCATAGCAGC
CCTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGTCCCTCAACAG
AGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCA
GCTATTTGAAACAATGATTTTATGAAATTCTTTGTGCAAATGGATGCATC
TGGAGGATACCATCCTGAGTGAGGTAACCCACTCCCAAATAAATCACTTG
ATTTGTATCCTTTGTAAAAGGAAATTAGCTCCAAAACTAAAAAACCCCAA
AAACATTTTCCCAACCCCAAAATCCTAAAGGAAAACCCTGGGGGGGAACT
TTATTTTCCCCTTGATAGAAAAAAAAAACCTGGCAGGGAATGCACAAAAA
AATTTTTCCTTTAATAA

NNNNTTACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGTGGTTTGTATCTGAG
GAGGGATCATACTCACCAGAGTGTTTTTCTACAGAAATTATGCATCTGTC
TAGAATGTGCATGCTTTACTTATTCTTTTTGTTGTTTGATTTTTCATAAC
AGGGTTTCTCTGTGTACCTCTGGATGTCCTGGAACATACTCTGTAGACCA
GTTTGGCCATGAAATTGAAAAATTGAACATCCACAAACCTCCTCTGCCTT
TGAAATGCTGGAATTAATGTGTCTGTCACCATTGCTTGGCACTGATACTT
TTGATATACAGAATTGTATGATTGTTAAATTTGTAGATAGCAGCATGACT
AGAGAAATGGCAGCTGTGTCTTTCCAGGTAAGCTGGTGTATATGATGGCA
GGAAATCACATCACTGTAAGTTTTCTCTTTGCTCCTGTGGAATTCCACCT
CCAGAAGATAAGGTTTCCCAGTGCTTTCAAAGCCGAAACCCTTGAAGCCA
TGGTGTTGAAAATATGGCTGAAAAACCCATCCTCTGTGGCCTGCTGAATT
TTCAAAAGTTTCCCTTTTTCCGTCCGAGTTTTTTCAATAAATTTACCATA
CCAACCCTTTCCTCCCCTTTTCCCTTCTCCCCTTTCCTTCCCTATACCCA
ATAAAACCTTTTCCTTCCCTTCCTTCCCCTTTTCTTCCCTCTTTCCCCTT
TATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_j18.g1 MSMg01no353_j18.g1 CHROMAT_FILE:
MSMg01no353_j18.g1 PHD_FILE: MSMg01no353_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:32 2005
         (378 letters)



>mm_chr6_90037426_90038203
          Length = 778

 Score =  716 bits (370), Expect = 0.0
 Identities = 376/378 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtggtttgtatctgaggagggatcatactcaccagagtgtttttctacagaaattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgtggtttgtatctgaggagggatcatactcaccagagtgtttttctacagaaattat 260

                                                                       
Query: 61  gcatctgtctagaatgtgcatgctttacttattctttttgttgtttgatttttcataaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 gcatctgtctagaatgtgcatgctttacttattctttttgttgtttgatttttcacaaca 320

                                                                       
Query: 121 gggtttctctgtgtacctctggatgtcctggaacatactctgtagaccagtttggccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtttctctgtgtacctctggatgtcctggaacatactctgtagaccagtttggccatg 380

                                                                       
Query: 181 aaattgaaaaattgaacatccacaaacctcctctgcctttgaaatgctggaattaatgtg 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 aaattgaaaaattgaacatccacaaacctcctctgcctttgaaatggtggaattaatgtg 440

                                                                       
Query: 241 tctgtcaccattgcttggcactgatacttttgatatacagaattgtatgattgttaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgtcaccattgcttggcactgatacttttgatatacagaattgtatgattgttaaatt 500

                                                                       
Query: 301 tgtagatagcagcatgactagagaaatggcagctgtgtctttccaggtaagctggtgtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtagatagcagcatgactagagaaatggcagctgtgtctttccaggtaagctggtgtat 560

                             
Query: 361 atgatggcaggaaatcac 378
           ||||||||||||||||||
Sbjct: 561 atgatggcaggaaatcac 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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