BAC Information

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BAC

Clone NameMSMg01-353K13
Chromosome6 (Build37)
Map Location 104,008,786 - 104,009,167
singlet/doubletsinglet
Overlap genenone
Upstream geneChl1, LOC666141, LOC100043345
Downstream geneCntn6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353K13.T7 (MSMg01no353_k13.b1)MSMg01-353K13.TJ (MSMg01no353_k13.g1)
ACCAG464483AG464484
length754778
length of high quality
(start - end)
471 (53 - 523)382 (84 - 465)
definitionCHROMAT_FILE: MSMg01no353_k13.b1 PHD_FILE: MSMg01no353_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:35 2005CHROMAT_FILE: MSMg01no353_k13.g1 PHD_FILE: MSMg01no353_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAAGCTCTTTCCCACTTTCTCTTCAATTACATTCAGTG
GTGTATCTGGTTTTATGTTGAGGTCTTGATCCACTTGGACTTGAGCTTTT
TACAGGGTGATAAATATGGGTCTATTTTCATTTTTCAAATATACAGACAG
TGAGTTAAACCAGTACCATTTATTGAAAATTTTTTTTCTATTGTATATTT
TTGGATTCTTTGTCAAGAAGCTAACCACCAAAAAAGTAAACAACCCAATA
AAAATGGGGTATAGGACTAAACAGAGAATTCACAACAGAGGAATCACAAA
TCGCTGATTAGTACTTAAATGTTAAAAATCCTTAATGATCAGAGAAATGC
AAATCAATACTACCCTGAGACTCCACCTTACACAAACCAGAATCATTGAG
ATCAAAACCTCAGGCAACAGCACATGTTGACAAGTATGTGGAGGAAGAGA
AACATGTCTTCATTGCTGGTGGAATTGAAAACTGGTAAAACCACTCTGGA
AATCAATCCGGAGTTTCCTCAGAAAGTTAGAATAGATACCCTGCCATGCC
ACAGGGGCATGCGTCCCACCATGCTCATAAAAGCCTGCTTGTGAATAGCC
AAAGCTGAAAAAACCCACAAATTCCTCTCCCGAAAAATAAAACCCCCACG
TGGGTCCTTTGGCGCAAAAGAAACACCCCCCCCTTAAAAATGAAAAAGGT
TCGG
NNNNCCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACGATCTGATTACTT
CTCATTAGTCTCCAGCCTTACTAAAGTAATGCAAATAAGGCCAATGGATT
TCACTGGGCATTCTTTTACCAAGTTAACTTGATCCTTTTAACTTCTATTC
ATGTACCAAGTTAAAATTCAACTTGCGCAGTTGTATGTTTCCTACATTGT
TTATGATGGAATATTAATTTATGTAATGTTAAGTGTTATAAAATTTCTGC
AAATTTGAAAACCTGTGGTGTCAACCAATGCAAATAGGATCCTTTTTCAA
GAAAGTAAAAAGTATACTGCATTTGATTTTTGATCATAATTTAGAAATAT
TTATTTATTTATTTATGTGTGTGTAAGTGTTATTATGCTTGTAGAGATTA
GAGAACATTTTGTTGTAGTTGGTTCTTTCCTCCAGTATGAGAGCCATGGC
GTGCAATTTAAGCCTTTGTACTTAGAGACTAAAGTCTTACTTCCTGACCT
ACTTCCTCATCCCAAGATCATCTTGCTCTGTCGCCCAATTATTTCTTGCC
CCTCCTTTCCTTCTTACTCACATTTTTTTAACCACTTTATTTGCTTTTAC
CCATCTTTTCCTGTTTCCTCATCTCATCATCCTCATTTAAACCCACTCCC
TTTTTTACCCTATCCTATCTCTTCTTAGCCTTTCCCTCCTGTAAATAATC
CTCCCTTTATTTATTCTTTCTTCCCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_k13.g1 MSMg01no353_k13.g1 CHROMAT_FILE:
MSMg01no353_k13.g1 PHD_FILE: MSMg01no353_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:36 2005
         (382 letters)



>mm_chr6_104008586_104009367
          Length = 782

 Score =  731 bits (378), Expect = 0.0
 Identities = 381/382 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacgatctgattacttctcattagtctccagccttactaaagtaatgcaaataaggcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacgatctgattacttctcattagtctccagccttactaaagtaatgcaaataaggcca 260

                                                                       
Query: 61  atggatttcactgggcattcttttaccaagttaacttgatccttttaacttctattcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggatttcactgggcattcttttaccaagttaacttgatccttttaacttctattcatg 320

                                                                       
Query: 121 taccaagttaaaattcaacttgcgcagttgtatgtttcctacattgtttatgatggaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taccaagttaaaattcaacttgcgcagttgtatgtttcctacattgtttatgatggaata 380

                                                                       
Query: 181 ttaatttatgtaatgttaagtgttataaaatttctgcaaatttgaaaacctgtggtgtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaatttatgtaatgttaagtgttataaaatttctgcaaatttgaaaacctgtggtgtca 440

                                                                       
Query: 241 accaatgcaaataggatcctttttcaagaaagtaaaaagtatactgcatttgatttttga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 accaatgcaaataggatcctttttcaagaaagtaaaaagtatactgcatttgatttttta 500

                                                                       
Query: 301 tcataatttagaaatatttatttatttatttatgtgtgtgtaagtgttattatgcttgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcataatttagaaatatttatttatttatttatgtgtgtgtaagtgttattatgcttgta 560

                                 
Query: 361 gagattagagaacattttgttg 382
           ||||||||||||||||||||||
Sbjct: 561 gagattagagaacattttgttg 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)