Query= MSMg01no354_i10.b1 MSMg01no354_i10.b1 CHROMAT_FILE:
MSMg01no354_i10.b1 PHD_FILE: MSMg01no354_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:42 2005
(329 letters)
>mm_chr6_112410375_112411103
Length = 729
Score = 632 bits (327), Expect = 0.0
Identities = 327/327 (100%)
Strand = Plus / Minus
Query: 1 agtctgttttctttctatcacataggttctgggctagaactcagggttattagaattggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 agtctgttttctttctatcacataggttctgggctagaactcagggttattagaattggc 567
Query: 61 agtgggcatcatttctcactgagccatcttgttggcctcataaaaatcaatttcttcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agtgggcatcatttctcactgagccatcttgttggcctcataaaaatcaatttcttcttt 507
Query: 121 tttttaagtaactgctagaaaactttaaatttcacagcaggtgggtactttggccatctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tttttaagtaactgctagaaaactttaaatttcacagcaggtgggtactttggccatctc 447
Query: 181 tataatgtctgcctagcttttctgtaagccgggtacggctctagtggaatcctataaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tataatgtctgcctagcttttctgtaagccgggtacggctctagtggaatcctataaaaa 387
Query: 241 ctacacatgtaacactaagccacagtgactgtcatgctgagagcacagtcctcacaatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctacacatgtaacactaagccacagtgactgtcatgctgagagcacagtcctcacaatta 327
Query: 301 tattcagagctcagccgctggaaggag 327
|||||||||||||||||||||||||||
Sbjct: 326 tattcagagctcagccgctggaaggag 300
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space: 230400
Effective search space used: 230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_i10.g1 MSMg01no354_i10.g1 CHROMAT_FILE:
MSMg01no354_i10.g1 PHD_FILE: MSMg01no354_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:42 2005
(493 letters)
>mm_chr6_112231326_112232218
Length = 893
Score = 922 bits (477), Expect = 0.0
Identities = 490/495 (98%), Gaps = 2/495 (0%)
Strand = Plus / Plus
Query: 1 attctttatatggtaggagaaaagcccaacaatgtcggtgttccagattcgatctgttac 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 attctttatatggtaagagaaaagcccaacaatgtcggtgttccagattcgatctgttac 258
Query: 61 ttgacctcccacctaacacacacacacacacacacacacacacacacacacacacacaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttgacctcccacctaacacacacacacacacacacacacacacacacacacacacacaca 318
Query: 121 cac--tcacactctttgcctagacatcccatctccacagactgtatatcttcagagaaac 178
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cacactcacactctttgcctagacatcccatctccacagactgtatatcttcagagaaac 378
Query: 179 ccagatatgcttcctctctgtgaaagtagaatatgtcattctctgccctccttttatttc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccagatatgcttcctctctgtgaaagtagaatatgtcattctctgccctccttttatttc 438
Query: 239 ctaaacaatattctaagaaccatgagaaacaaagttagaaagtagcttccagatccaacc 298
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctaaacaagactctaagaaccatgagaaacaaagttagaaagtagcttccagatccaacc 498
Query: 299 agtatctagttttaacattaatgcttgcaggagggtaaaccagttgtctgtgctaagtat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agtatctagttttaacattaatgcttgcaggagggtaaaccagttgtctgtgctaagtat 558
Query: 359 gtatcttcagagactgctgaaccctgaacactgggttgtattttttcattatgttgattt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtatcttcagagactgctgaaccctgaacactgggttgtattttttcattatgttgattt 618
Query: 419 cagggacaccaaagagtaaaataacagggaaaggactaaaggctgagtaatgccctataa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cagggacaccaaagagtaaaataacagggaaaggactaaaggctgagtaatgccctataa 678
Query: 479 gaaacttgtcctcaa 493
|||||||||||||||
Sbjct: 679 gaaacttgtcctcaa 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
