Query= MSMg01no354_j17.b1 MSMg01no354_j17.b1 CHROMAT_FILE:
MSMg01no354_j17.b1 PHD_FILE: MSMg01no354_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:48 2005
(520 letters)
>mm_chr6_114634811_114635728
Length = 918
Score = 926 bits (479), Expect = 0.0
Identities = 505/517 (97%), Gaps = 8/517 (1%)
Strand = Plus / Plus
Query: 5 gaattctgatcattttttaaaaaccttgactgagggtcaagctgatatgagttccagagg 64
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattctgatcatttttttaaaaccttgactgagggtcaagctgat--gagttccagagg 262
Query: 65 tctgtcagtcaataagatgcagaactgatgcctgcagagatttaaagacagatggagatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 263 tctgtcagtcaataagatgcagaactgatgcctgcagagatttaaagacagatggggatg 322
Query: 125 gggaaaggactcagcagttaagagtgcttactgctctggccatggccccaggttcctatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gggaaaggactcagcagttaagagtgcttactgctctggccatggccccaggttcctatc 382
Query: 185 ccagcagccacacctttggcaactaaccatatgtaactctagctccaggaggtccagtgc 244
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 383 ccagcagccacacctttggcaactaaccatatgtaattctagctccaggaggtccagtgc 442
Query: 245 ccgcttctggccggttggtacactctatacataaaatacacagacatacatgtacaaaca 304
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ccgcttctggccagttggtacactctatacataaaatacacagacatacatgtacaaaca 502
Query: 305 tactcatatacatacaagaagaataaataaaccttcattttaaacaaaagatttaatttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tactcatatacatacaagaagaataaataaaccttcattttaaacaaaagatttaatttt 562
Query: 365 tttttttttttttttgcaaaggatttt-ctaagatgaaacctaacatgaggtaatacatt 423
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 563 tttttttttt-----gcaaaggatttttctaagatgaaacctaacatgaggtaatacatt 617
Query: 424 ctatcaggagattgaacgttcatgtttaaggaggattaaagttctcaagtcatctcagga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctatcaggagattgaacgttcatgtttaaggaggattaaagttctcaagtcatctcagga 677
Query: 484 ctacacaaccttgtaaacatactatcaaaagaaaaaa 520
|||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctacacaaccttgtaaacatactatcaaaagaaaaaa 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 918
Length adjustment: 10
Effective length of query: 510
Effective length of database: 908
Effective search space: 463080
Effective search space used: 463080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_j17.g1 MSMg01no354_j17.g1 CHROMAT_FILE:
MSMg01no354_j17.g1 PHD_FILE: MSMg01no354_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:48 2005
(532 letters)
>mm_chr6_114805110_114806040
Length = 931
Score = 890 bits (460), Expect = 0.0
Identities = 490/500 (98%), Gaps = 1/500 (0%)
Strand = Plus / Minus
Query: 33 actgggtaaggaccttgaccctagcctgctccccagactccccaggaggaatcagaatct 92
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 731 actgggtaaggaccttgaccctagcctgct-cccagactccccaggaggaatcagaatct 673
Query: 93 ctagaagagatgggaaggcctgtcatacttccttctgagggatgtgagccctcttatcct 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ctagaagagatgggaaggcctgtcatacttccttctgagggatgtgagccctcttatcct 613
Query: 153 tttccttgtgtgccaccatctgtcacagagcctttccaaggccacgagccctaggtttgg 212
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 612 tttccttgtgtgccaccatccctcacagaccctttccaaggccacgagccctaggtttgg 553
Query: 213 gggcggggctatcagcaggtgacactaagaccaggaaggacttcctaggataaaatacct 272
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gggcagggctatcagcaggtgacactaagaccaggaaggacttcctaggataaaatacct 493
Query: 273 tattcaagagtgagggccagaagagggtggggctcacagggcaatgaggctggtccatga 332
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 492 aattcaagagtgagggccagaagagggtggggctcacagggcaatgaggctagtccatga 433
Query: 333 cattctaggttggtaggcaggcaggaaggaagcaaggcactgtctgggggcagtaagcag 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cattctaggttggtaggcaggcaggaaggaagcaaggcactgtctgggggcagtaagcag 373
Query: 393 aggggacagtggaggccacagcccgggaaagctgggagctgagggcaaggttggctgtga 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aggggacagtggaggccacagcccgggaaagctgggagctgagggcaaggttggctgtga 313
Query: 453 gggctgggcagccacaggtccccatctgagaagcaggcaatggagtctgctgctgccact 512
|||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 312 gggctgtgcagccgcaggtccccatctgagaagcaggcaagggagtctgctgctgccact 253
Query: 513 gtctctccatgagcccttgg 532
||||||||||||||||||||
Sbjct: 252 gtctctccatgagcccttgg 233
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 931
Length adjustment: 10
Effective length of query: 522
Effective length of database: 921
Effective search space: 480762
Effective search space used: 480762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
