Query= MSMg01no354_n07.b1 MSMg01no354_n07.b1 CHROMAT_FILE:
MSMg01no354_n07.b1 PHD_FILE: MSMg01no354_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:06 2005
(579 letters)
>mm_chr6_101803354_101804332
Length = 979
Score = 1036 bits (536), Expect = 0.0
Identities = 565/579 (97%), Gaps = 8/579 (1%)
Strand = Plus / Minus
Query: 5 gaattccacttc----taccgactcagcttcctgattggctgtgaccaagaatactcact 60
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gaattccacttcaaaat---gactcagcttcctgattggctgtgaccaagaatactcact 723
Query: 61 ccagaataccacttacatcttatcatgtctggccacatgtcttcagcatagctgtgtttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ccagaataccacttacatcttatcatgtctggccacatgtcttcagcatagctgtgtttt 663
Query: 121 cttcacttcaaaaacataatatgaagattattaagactcccaatagaagacaaacctagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 cttcacttcaaaaacataatatgaagattattaagactcccaatagaagacaaacctagc 603
Query: 181 ttagagaaccaacattcaacaaattgttcttatattgcatggtcatattaaaacatttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ttagagaaccaacattcaacaaattgttcttatattgcatggtcatattaaaacatttta 543
Query: 241 aaccaaactaaaggaaacaaaacaagcaatccctctctccaaaataaactttaaaacctt 300
|||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 542 aaccaatctaaaggaaacaaaacaagcaatccctc-ccccaaaataaactttaaaacctt 484
Query: 301 ttctaaaaatgtattttattttcacatttagcaaacacagttaaagaaatcatcctattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttctaaaaatgtattttattttcacatttagcaaacacagttaaagaaatcatcctattt 424
Query: 361 tcaaacaaagtctatgtcagtagattcctttcctgccccaccacccttctctctctacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tcaaacaaagtctatgtcagtagattcctttcctgccccaccacccttctctctctacac 364
Query: 421 cttgtaaccctttgaccccattctgctttctattttcaggncatatgtagccttttgtcc 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 363 cttgtaaccctttgaccccattctgctttctattttcaggtcatatgtagccttttgtcc 304
Query: 481 tcttcccatattccttagcacctctgttatccccctttggtcttctttccacagtttcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tcttcccatattccttagcacctctgttatccccctttggtcttctttccacagtttcaa 244
Query: 541 tctttatataccnttantctcatttgcatttttgtatgc 579
|||||||||||| ||| ||||||||| ||||||||||||
Sbjct: 243 tctttatatacctttattctcatttgtatttttgtatgc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_n07.g1 MSMg01no354_n07.g1 CHROMAT_FILE:
MSMg01no354_n07.g1 PHD_FILE: MSMg01no354_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:06 2005
(473 letters)
>mm_chr6_101657029_101657900
Length = 872
Score = 833 bits (431), Expect = 0.0
Identities = 463/475 (97%), Gaps = 5/475 (1%)
Strand = Plus / Plus
Query: 1 ttagattcaaagtcagagacaaaacagtgaagagattctgttttgacagcctcctcatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ttagattcaaagtcagagacaaaacagtgaagagattctgttttgacagcctcctcacat 260
Query: 61 --ttgtatcagctcatggctacctagagattgagttcagctttgagaaatctgacatctt 118
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 cct--tatcagctcatggctacctaaagattgagttcagctttgagaaatctgacatctt 318
Query: 119 tctatgatatctgtatgatatgagattttattatatgtagtaatatggtcataagaactt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tctatgatatctgtatgatatgagattttattatatgtagtaatatggtcataagaactt 378
Query: 179 caaaggcaatattttttatctttctttgatggttcttgaaactctggtaattagggagaa 238
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caaaggcaatattttatatctttctttgatggttcttgaaactctggtaattagggagat 438
Query: 239 gataaaaataaccttgtacacttactctccagggatgtaggcttgccccctcagcaaaga 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gataaaaataaccttgtacacttactctccagggatgtaggcttgccccctcagcaaaga 498
Query: 299 aaacaatataactgatgaaggaattacatcattagaggatttatgaagtgttagctcaag 358
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaacaatgtaactgatgaaggaattacatcattagaggatttatgaagtgttagctcaag 558
Query: 359 aagtctgcttcttgaacaccattttgctttagtaatttgttatttagttcaaaactaatg 418
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 559 aagtctgcttcttgaacaccattttgctttagtaatttgttacttagttcgaaactaatg 618
Query: 419 tcaatttaaaaaaaagaatttgtgattgagtttaaatggcttggttttctttatg 473
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tcaatttaaaaaaa-gaatttgtgattgagtttaaatggcttggttttctttatg 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 872
Length adjustment: 10
Effective length of query: 463
Effective length of database: 862
Effective search space: 399106
Effective search space used: 399106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
