BAC Information

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BAC

Clone NameMSMg01-354O22
Chromosome6 (Build37)
Map Location 82,673,599 - 82,674,066
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1, Pole4
Downstream geneLOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354O22.T7 (MSMg01no354_o22.b1)MSMg01-354O22.TJ (MSMg01no354_o22.g1)
ACCAG465441AG465442
length749767
length of high quality
(start - end)
431 (48 - 478)474 (83 - 556)
definitionCHROMAT_FILE: MSMg01no354_o22.b1 PHD_FILE: MSMg01no354_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:14 2005CHROMAT_FILE: MSMg01no354_o22.g1 PHD_FILE: MSMg01no354_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGGTCCTCTGGAAGATAATCCTCTTAACCATTGAACTACTCCT
CCACCCTGATCTTTCCTTTTGAGTAATGACTCTTCAGTGAGCCTGGAGCT
CATCAATTCAGCCAGTCTGGCTGGCCAATGAGCTTCTGGGAGCCACCTAT
CTCTGCCTGCCCAGCACTGAAGTTACTACATACGTGTGCTACCACATCTG
GCTTTTATGTGTGTGTGTGTGTTGCAGATCCAAATTTAGGTCTTCATTCT
TGTGTGGCAAGCCCGTTACTGACTGAGCCTTCTCTGCAACCCTGCATATA
TAGTTTTGTCAGGCATTATTCAGATGTCTTCCAAAGCGCTTGAACCACTT
TGAAATCCCTCTGGCAGAACAGATGTGNTAGTCCTTGCTGGAGCTCTGCC
TTCTTGAGCTGTGNTCTGTTTGAACCAATGGCCCCTGTTGTTTCATCTCT
TGAGGACATAGTTTTGGGACTTCCTTAGTAACATGAAGAACCAGGTTACA
CTTACTAACTTGTGCCTTACAAACTGGTGTCTCTCACCTCAGATCACCTC
CACTTTTTTGATTTCTTTTGTGGAGTTCATTGCTTATTAAANNCCTGGAT
TTCTATCATTCANTATGTCCCATTTTAACGATTCCCTCCAAATGACTCCG
TGAAACCAGGCCAAGCCGCTCCNTCTCNCTGCATTATTCCCGCCCNCAN
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCTGGAGGCAGGAGAGT
CACTTCAAGGCCATCCTCACATACTTAAGTCAGTGGAATGAGCTTTAGAA
AGCCAGGCTGAGAGGAAGCGAAAACAAAGGACCCACGTGTGCACCAAGAA
ACGCAGTCCCGCTTGATCATGGACTCAGATTCAGTGTAGGATAAAACTGG
ACCTCCATGTGTGAGTGGATGTGTGTGTGTTGTGTAGATCAGAGGACAAC
TTGTGAGAAACCAGTCCTCCCCTTCTGTGGTGGGCTCCAGGGATCAAATC
AGATTTGCATATCAAGGTCCTTTACGCTCTTAACTATCTTGCCAATCTTA
TCACATTTTTAAGGCGGTGTTTTCTGAAATGTAAAGGCTAGAAAAGTCCC
AGACATGCACTCACGGGTGCATGTGAGAAAGTGAAAGGATGGGCTTGGCT
GTTTTTCCTCAGCTGTCCACCTTGTTTCTCGAGACATGGTCTCTTATGGC
CTGGAACCTGTTGGGTAAGCTAGGCTTGCAGACCAGTGACCTCCAGGGAT
CCACCTGGCTCAGCCTCCCCAGCCCTGGGATCACAAGGGTCAGACCGGCC
TGGACCTAGTCTCACCGGTCCTGTTCCTGGTTCTTTTTGAGCTTGTAAAG
GCTCCTCTCCTGGAACTTCCAAGTTCTTGTGAAGATAATAATGACCTGCA
GGTTTTTGACCCACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_o22.g1 MSMg01no354_o22.g1 CHROMAT_FILE:
MSMg01no354_o22.g1 PHD_FILE: MSMg01no354_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:14 2005
         (474 letters)



>mm_chr6_82673399_82674268
          Length = 870

 Score =  824 bits (426), Expect = 0.0
 Identities = 460/474 (97%), Gaps = 6/474 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctggaggcaggagagtcacttcaaggccatcctcacatacttaagtcagtggaatgag 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 gcctggaggcaggagagtcacttcaaggccatcctcatatacttaagtcagtggaatgag 260

                                                                       
Query: 61  ctttagaaagccaggctgagaggaagcgaaaacaaaggacccacgtgtgcaccaagaaac 120
           ||||||||||||||||||    |||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ctttagaaagccaggctg----gaagggaaaacaaaggacccacgtgtgcaccaagaaac 316

                                                                       
Query: 121 gcagtcccgcttgatcatggactcagattcagtgtaggataaaactggacctccatgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gcagtcccgcttgatcatggactcagattcagtgtaggataaaactggacctccatgtgt 376

                                                                       
Query: 181 gagtggatgtgtgtgtgttgtgtagatcagaggacaacttgtgagaaaccagtcctcccc 240
           ||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 377 gagtggatgtgtgtgt--tgtgtagatcagaggacaacttgtgagaaaccaatcctcccc 434

                                                                       
Query: 241 ttctgtggtgggctccagggatcaaatcagatttgcatatcaaggtcctttacgctctta 300
           |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 435 ttctgtggtgggctccagggatcaaatcagatttgcatatcaagttcctttatgctctta 494

                                                                       
Query: 301 actatcttgccaatcttatcacatttttaaggcggtgttttctgaaatgtaaaggctaga 360
           |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 495 actatcttgccaatcttatcacttttttaaggcagtgttttctgaaatgtaaaggctaga 554

                                                                       
Query: 361 aaagtcccagacatgcactcacgggtgcatgtgagaaagtgaaaggatgggcttggctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aaagtcccagacatgcactcacgggtgcatgtgagaaagtgaaaggatgggcttggctgt 614

                                                                 
Query: 421 ttttcctcagctgtccaccttgtttctcgagacatggtctcttatggcctggaa 474
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 615 ttttcctcagctgtccaccttgtttctcaagacatggtctcttatggcctggaa 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 870
Length adjustment: 10
Effective length of query: 464
Effective length of database: 860
Effective search space:   399040
Effective search space used:   399040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)