BAC Information

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BAC

Clone NameMSMg01-355D02
Chromosome6 (Build37)
Map Location 29,372,432 - 29,437,655
singlet/doubletdoublet
Overlap gene4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2
Upstream geneArf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw
Downstream geneIrf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355D02.T7 (MSMg01no355_d02.b1)MSMg01-355D02.TJ (MSMg01no355_d02.g1)
ACCAG465638AG465639
length760765
length of high quality
(start - end)
519 (46 - 564)447 (75 - 521)
definitionCHROMAT_FILE: MSMg01no355_d02.b1 PHD_FILE: MSMg01no355_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:34 2005CHROMAT_FILE: MSMg01no355_d02.g1 PHD_FILE: MSMg01no355_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,437,141 - 29,437,655)(29,372,432 - 29,372,878)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGAGGATAGAGCTGGGACTACGGTTCCTATCCCCTGACCTGCTC
ACCACACCCTGGGTTCTCACTTTCTCAGAGGCACTGAGTAACTGCACAGA
GGACCTGGTGGGGTCTGAGCTGGTGCCACCAGACCCCTGCTACACCTGCC
AGTGTCAGGTGAGTCCTCTTGCTGTGGGGACCCTCAGAGCCATCCACCCG
CTCTGCTCCGTGAGCTGAGGCTGAGCCCCTTCCTCTCAGCAGCTCCCGAG
CTCCTGCTCACTCTGACATTTGTCCCGAGTGTCATCTCCTGCCTACACCC
TGCTCCCAACTCTGTCCCCACAACCCCACAAGATCTGCTGTTTTCTCCAT
GTTGTGTTTACGTGCTCACAATAGGATCTGACGTGGCTCTGTACTCACCG
GGCCTGTCCTGAGCTCAGCTGTCCCCTGTGGGAGCGTCACACAACCCCTG
GCAGCTGCTGCCCCGTGTGTAAAGGTGAGTGTCCAGACTTGATCTCCCCA
TCAGAGAGAATTCAGGGATGTAGGAGGGAAGGGATGGCACTTGTGCGTGC
CCTGAGCTCTGCAGTTAGAGTGTTCCCTCCATGCTTTTGGGCAAACAGGA
GCTATTCCCATGGCTGGAAAGTTCACCTTTGATGTATAATGAACAATGAA
CTAACCCCCCATTCTCAAGGCTTGAGGTTTTCCAGGTGTCGCGAGAACTT
CCTTATTTGG
AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCCCTGTGTTTAAGGTGATAGAGGA
GGTCTAAAGAGCTGTGGTCCTTCTGGTCCTCTGGGGAGCATTTGGATGAG
CACACTCTGAATTGGTCCCATCTACCTTGAAGGAAGTAGAACTGAATCCC
CATTGTACTATGTTGCTCACCTTAAAAGTTCTCAAAAGTTTGGAACTTCT
GGTTACCAGAAAAATGTCAACAAAATACCAGGGAATTATATGCATTCCTT
TGGGTCACCAGATTCCATTGTCATTGGCCTCTCAAGCCAGACTTCTGGAG
AGGGTGTGATGTTGCTGAAAAGTTTCTAATGATTAGAGATGAAAATACTC
TCAGGAAGTCAAGAGCGATGTGTTCTGGGCACCTCTCCCTTGGCCCAGTT
CATGTAATCTGCTCTGTTGACAGAATTGCCAGTTTAGGATGGAGATTGTT
CCATGGTCTAAGGTAGGAACCTGAGGTGCTACCTGCCTCCTGGAACCTGT
AAGTTCTGTTTTGACTTTCTTCTCAGACTCTCTCAGCTGTATCACCTCTG
TTTCCTCTCCTTCTGCCTCTTTAAAAAAAGGACAGTTTAGTTAATGGTAC
GTTTTATAGAAGCAGTTTTTGTTTAGGTCCCCTCTCGCCATTTCCCTTTT
AAAAATTATTTATAACCCTTTTCATCTGCGTGAACTGGCTGTTCCTATGT
CATTTTATTCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_d02.b1 MSMg01no355_d02.b1 CHROMAT_FILE:
MSMg01no355_d02.b1 PHD_FILE: MSMg01no355_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:34 2005
         (519 letters)



>mm_chr6_29436937_29437855
          Length = 919

 Score =  942 bits (487), Expect = 0.0
 Identities = 508/515 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgaggatagagctgggactacggttcctatcccctgacctgctcaccacaccc 64
           ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 719 gaattcttgaggacagagctgggactacggttcctatcccctgacccgctcaccacaccc 660

                                                                       
Query: 65  tgggttctcactttctcagaggcactgagtaactgcacagaggacctggtggggtctgag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tgggttctcactttctcagaggcactgagtaactgcacagaggacctggtggggtctgag 600

                                                                       
Query: 125 ctggtgccaccagacccctgctacacctgccagtgtcaggtgagtcctcttgctgtgggg 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 599 ctggtgccaccagacccctgctacacctgtcagtgtcaggtgagtcctcttgctgtgggg 540

                                                                       
Query: 185 accctcagagccatccacccgctctgctccgtgagctgaggctgagccccttcctctcag 244
           |||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 539 accctcagagctgtccacccgctctgctctgtgagctgaggctgagccccttcctctcag 480

                                                                       
Query: 245 cagctcccgagctcctgctcactctgacatttgtcccgagtgtcatctcctgcctacacc 304
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cagctcctgagctcctgctcactctgacatttgtcccgagtgtcatctcctgcctacacc 420

                                                                       
Query: 305 ctgctcccaactctgtccccacaaccccacaagatctgctgttttctccatgttgtgttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ctgctcccaactctgtccccacaaccccacaagatctgctgttttctccatgttgtgttt 360

                                                                       
Query: 365 acgtgctcacaataggatctgacgtggctctgtactcaccgggcctgtcctgagctcagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 acgtgctcacaataggatctgacgtggctctgtactcaccgggcctgtcctgagctcagc 300

                                                                       
Query: 425 tgtcccctgtgggagcgtcacacaacccctggcagctgctgccccgtgtgtaaaggtgag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgtcccctgtgggagcgtcacacaacccctggcagctgctgccccgtgtgtaaaggtgag 240

                                              
Query: 485 tgtccagacttgatctccccatcagagagaattca 519
           |||||||||||||||||||||||||||||||||||
Sbjct: 239 tgtccagacttgatctccccatcagagagaattca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no355_d02.g1 MSMg01no355_d02.g1 CHROMAT_FILE:
MSMg01no355_d02.g1 PHD_FILE: MSMg01no355_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:34 2005
         (447 letters)



>mm_chr6_29372232_29373078
          Length = 847

 Score =  849 bits (439), Expect = 0.0
 Identities = 445/447 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccctgtgtttaaggtgatagaggaggtctaaagagctgtggtccttctggtcctctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccctgtgtttaaggtgatagaggaggtctaaagagctgtggtccttctggtcctctgg 260

                                                                       
Query: 61  ggagcatttggatgagcacactctgaattggtcccatctaccttgaaggaagtagaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagcatttggatgagcacactctgaattggtcccatctaccttgaaggaagtagaactg 320

                                                                       
Query: 121 aatccccattgtactatgttgctcaccttaaaagttctcaaaagtttggaacttctggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatccccattgtactatgttgctcaccttaaaagttctcaaaagtttggaacttctggtt 380

                                                                       
Query: 181 accagaaaaatgtcaacaaaataccagggaattatatgcattcctttgggtcaccagatt 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 accagaaaaatgtcaacaaaataccagggaattatatacattcctttgggtcaccagatt 440

                                                                       
Query: 241 ccattgtcattggcctctcaagccagacttctggagagggtgtgatgttgctgaaaagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccattgtcattggcctctcaagccagacttctggagagggtgtgatgttgctgaaaagtt 500

                                                                       
Query: 301 tctaatgattagagatgaaaatactctcaggaagtcaagagcgatgtgttctgggcacct 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 tctaatgattagagatgaaaatactctcaggaagtcaagagcgacgtgttctgggcacct 560

                                                                       
Query: 361 ctcccttggcccagttcatgtaatctgctctgttgacagaattgccagtttaggatggag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcccttggcccagttcatgtaatctgctctgttgacagaattgccagtttaggatggag 620

                                      
Query: 421 attgttccatggtctaaggtaggaacc 447
           |||||||||||||||||||||||||||
Sbjct: 621 attgttccatggtctaaggtaggaacc 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)