BAC Information

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BAC

Clone NameMSMg01-355L20
Chromosome6 (Build37)
Map Location 28,728,783 - 28,729,297
singlet/doubletsinglet
Overlap geneSnd1
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350
Downstream geneLrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355L20.T7 (MSMg01no355_l20.b1)MSMg01-355L20.TJ (MSMg01no355_l20.g1)
ACCAG466055AG466056
length753777
length of high quality
(start - end)		519 (47 - 565)325 (80 - 404)
definitionCHROMAT_FILE: MSMg01no355_l20.b1 PHD_FILE: MSMg01no355_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:16 2005CHROMAT_FILE: MSMg01no355_l20.g1 PHD_FILE: MSMg01no355_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGCAATATGAATCAGGATTCCATTCAACCTAAATAAGATGAAGT
GCATTCGGCTGGAACTGACAGGATCCAGTGGAAACACGTGCCTGTCAAAA
GATAGGACTTATAATCTGTACTTAATTGCAAGGTGAACTTGTGTAGGTCA
TTGAACTGCTCTCATTTCTAATACCCACCTCTATTAAAATAAGAAATTTT
AACTAAAGCATTTCTCAGGCCCTTTGCAGTCATAGAATTCTGTGATTCTG
TGAATGTTTATTTGGTGTGTGGTGATACCATTGCTGACCTTTATTTAATA
GTCTAGGAAATCTGGAAAGAGACCTAAGCACTGCTGGTTTCTTGGGCTGA
CCTCTAGGATCTGAGTGTCATGGACCTACAGTCAGGTGCAGGAGCTTCCA
GGTCCTTTCCACGTGAGCTTGCATGAACATTGTTGACATTTGCTCTTCTA
ACTTTTCAACTGTATATGAACTTTGTCTTGATTTTACCTTTCTCTTTGTG
TTTACAATCTCACTGNTACACATTTGAAAGTAGGTCTTCAAATCCTTGAC
CCAAGTGTAGACTATCACTCACATTTTTAAGGAACAATTGATCCCAGCGC
TTAAATTCATTTCTTTAACGAAAGGGTTTTTTTGTAAGGTGGGTATTGTT
TTTCTGTCTCTAACACAACAGCCTCTATTATCCCCCGTCTTTCTTTTCCT
CCG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCACAGCTATTCCTAGATGC
TCAGAATTTAGTTGAATTCATTGACAATCAGTATTAGCCACTACAGCAAG
TGAAGTGTGGGAGCACATGCCTTCACCATCACTGGGAGAGAGAGGTGGGT
AAATTTACATGAGTTTATGACCAGCTTGCTCTACAAGGTGAGTTCCAGGG
CAGGCAGGGCTACATATTGAAATCCTTGTCTTAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATA
AAAGAACATTACTGATATATAGGATATGAAGCTAGCAAATAGTAAGGTAC
CTAACACCCATAGTACATGAACCAGAGGAGAGGCGTTTCGCTCACTCAAT
GCTCACAGCATCTTAGTTCAGCCACCCTCCCGGCATCACGGTTCCCTGGA
TCCTCATGTCCTGTGCCTAAAACAGTGAGCCAGTTCTTTTTTTTACTATT
TCCCCGATGTTTCATTTCGCCTTTCTGGCGAAATTGACTTTTTTTTCTTC
CTTTTTATCCCTTACCGCTCTCTTATTTTTCTTCGAAACATAATCGTTTT
CTCTTACTCTGTTTCCTTATTCCCTTTTCCCATTGGTTCGTTTCTTTTCT
TTACCCTACCTGTATATATTTCTTCTCCTTTTTTCTCTCCCTTTCTCCTC
TTTTCCCTTTTCCCTTTTTCGCATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_l20.b1 MSMg01no355_l20.b1 CHROMAT_FILE:
MSMg01no355_l20.b1 PHD_FILE: MSMg01no355_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:16 2005
         (519 letters)



>mm_chr6_28728579_28729497
          Length = 919

 Score =  980 bits (507), Expect = 0.0
 Identities = 513/515 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcaatatgaatcaggattccattcaacctaaataagatgaagtgcattcggct 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcaagatgaatcaggattccattcaacctaaataagatgaagtgcattcggct 264

                                                                       
Query: 65  ggaactgacaggatccagtggaaacacgtgcctgtcaaaagataggacttataatctgta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaactgacaggatccagtggaaacacgtgcctgtcaaaagataggacttataatctgta 324

                                                                       
Query: 125 cttaattgcaaggtgaacttgtgtaggtcattgaactgctctcatttctaatacccacct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttaattgcaaggtgaacttgtgtaggtcattgaactgctctcatttctaatacccacct 384

                                                                       
Query: 185 ctattaaaataagaaattttaactaaagcatttctcaggccctttgcagtcatagaattc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 ctattaaaataagaaattttaactaaagcatttctcaggccctttgcagccatagaattc 444

                                                                       
Query: 245 tgtgattctgtgaatgtttatttggtgtgtggtgataccattgctgacctttatttaata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgattctgtgaatgtttatttggtgtgtggtgataccattgctgacctttatttaata 504

                                                                       
Query: 305 gtctaggaaatctggaaagagacctaagcactgctggtttcttgggctgacctctaggat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtctaggaaatctggaaagagacctaagcactgctggtttcttgggctgacctctaggat 564

                                                                       
Query: 365 ctgagtgtcatggacctacagtcaggtgcaggagcttccaggtcctttccacgtgagctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgagtgtcatggacctacagtcaggtgcaggagcttccaggtcctttccacgtgagctt 624

                                                                       
Query: 425 gcatgaacattgttgacatttgctcttctaacttttcaactgtatatgaactttgtcttg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcatgaacattgttgacatttgctcttctaacttttcaactgtatatgaactttgtcttg 684

                                              
Query: 485 attttacctttctctttgtgtttacaatctcactg 519
           |||||||||||||||||||||||||||||||||||
Sbjct: 685 attttacctttctctttgtgtttacaatctcactg 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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