Query= MSMg01no356_b03.b1 MSMg01no356_b03.b1 CHROMAT_FILE:
MSMg01no356_b03.b1 PHD_FILE: MSMg01no356_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:41 2005
(554 letters)
>mm_chr6_63449332_63450285
Length = 954
Score = 998 bits (516), Expect = 0.0
Identities = 548/574 (95%), Gaps = 24/574 (4%)
Strand = Plus / Plus
Query: 5 gaattcttaattaaaattaatattttaatatgatttgagataactatcaactacaatttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaattcttaattaaaattaatattttaatatgatttgagataactatcaactacaatttc 240
Query: 65 acaattatatcttataatcttataatagaaggataaaatacctactgctgatggtggaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acaattatatcttataatcttataatagaaggataaaatacctactgctgatggtggaaa 300
Query: 125 tatgtcagaagtacatatagatataattgattatgtgtgtgcatatgtgtgtatgtc--- 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tatgtcagaagtacatatagatataattgattatgtgtgtgcatatgtgtgtatgtctgt 360
Query: 182 ---------------------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtaattttaaga 220
|||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaattttaaga 420
Query: 221 gatagtcaatgtttaatttgactaccaacttaaggctataaaacaaacctcattctgaac 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatagtcaatgtttaatttgactaccaacttaaggctataaaacaaacctcattctgaac 480
Query: 281 actttctaatgcaaacacctggggaaaatgtttcatattccgtgtatgtttttaacattt 340
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 actttctaatccaaacacctggggaaaatgtttcatattccgtgtatgtttttaacattt 540
Query: 341 gcatctgagaaaaagagctaggagataaatgcatgatatgagatattgttctaaatgtgt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gcatctgagaaaaagagctaggagataaatgcatgatatgagatattgttctaaatgtgt 600
Query: 401 gtggtgatgttagtgtagacactgctgcaggatttagggagtggatcatattagggacct 460
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 601 gtggtgatgttagtgtagacactgctgcaggatttagggagtagatcatattagggacct 660
Query: 461 tgtgtcttgatgttcttcaagaaaatcacacatgggtctttctaccaacatgcttcatgt 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgtgtcttgatgttcttcaagaaaatcacacatgggtctttctaccaacatgcttcatgt 720
Query: 521 cttcttagatgaaaagctaagtttaagaggaagg 554
||||||||||||||||||||||||||||||||||
Sbjct: 721 cttcttagatgaaaagctaagtttaagaggaagg 754
Score = 64.5 bits (33), Expect = 2e-14
Identities = 52/61 (85%), Gaps = 8/61 (13%)
Strand = Plus / Minus
Query: 156 tatgtgtgtgcatatgtg--tgtatgt---c-tgtgtgtgtgtgtgtgtgtgtgtgtgtg 209
|||||||||| | |||| ||||||| | ||||||||||||||||||||||||||||
Sbjct: 68 tatgtgtgtg--tctgtgtatgtatgtatgcatgtgtgtgtgtgtgtgtgtgtgtgtgtg 11
Query: 210 t 210
|
Sbjct: 10 t 10
Score = 60.7 bits (31), Expect = 3e-13
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 168 tatgtgtgtatgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgt 210
||||| || |||| |||||||||||||||||||||||||||||
Sbjct: 48 tatgtatgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 6
Score = 58.7 bits (30), Expect = 1e-12
Identities = 38/42 (90%), Gaps = 4/42 (9%)
Strand = Plus / Minus
Query: 169 atgtgtgtatgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgt 210
||||||| || |||||||||||||||||||||||||||||
Sbjct: 39 atgtgtg--tg--tgtgtgtgtgtgtgtgtgtgtgtgtgtgt 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 4
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_b03.g1 MSMg01no356_b03.g1 CHROMAT_FILE:
MSMg01no356_b03.g1 PHD_FILE: MSMg01no356_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:41 2005
(542 letters)
>mm_chr6_63519684_63520622
Length = 939
Score = 1009 bits (522), Expect = 0.0
Identities = 536/542 (98%), Gaps = 3/542 (0%)
Strand = Plus / Minus
Query: 1 aaaacacctaataataaaactagaaattcagactatattaaggaaaatgacttgataatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaaacacctaataataaaactagaaattcagactatattaaggaaaatgacttgataatt 680
Query: 61 ttgccatatttcttctaatactctaacaccactttaacattagtaattttgaggttgtac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttgccatatttcttctaatactctaacaccactttaacattagtaattttgaggttgtac 620
Query: 121 tccactaaaatggtgttttctctctacattacttttttttcaacctttcatattagacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tccactaaaatggtgttttctctctacattacttttttttcaacctttcatattagacaa 560
Query: 181 tctcctattctttttttttttcattatcttctatggcctcaaagcctcctgacatctatt 240
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tctcctattc---tttttttccattatcttctatggcctcaaagcctcctgacatctatt 503
Query: 241 atttactctactttcaatatttatcttatttttaaacttctacgacatttatctccaaat 300
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 502 atttactctactttcaatatttatgttctttttaaacttctacgacatttatctccaaat 443
Query: 301 gttctctgctctgacaaattccctttaatcagtccaatacttctgaaggcatttcttttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gttctctgctctgacaaattccctttaatcagtccaatacttctgaaggcatttcttttc 383
Query: 361 tttccttaaccatgaaacatcatgaaatatataataattttacatttactttattttgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttccttaaccatgaaacatcatgaaatatataataattttacatttactttattttgaa 323
Query: 421 tatatcgataggatatgcttcagcacacacagtgaaaatacattctgcttttataactaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tatatcgataggatatgcttcagcacacacagtgaaaatacattctgcttttataactaa 263
Query: 481 tcaatgaaaaacttgttttccttgtttgagtttccttttatcaatttaatcagggaatat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcaatgaaaaacttgttttccttgtttgagtttccttttatcaatttaatcagggaatat 203
Query: 541 ca 542
||
Sbjct: 202 ca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 939
Length adjustment: 10
Effective length of query: 532
Effective length of database: 929
Effective search space: 494228
Effective search space used: 494228
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
