Query= MSMg01no356_f01.b1 MSMg01no356_f01.b1 CHROMAT_FILE:
MSMg01no356_f01.b1 PHD_FILE: MSMg01no356_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:00 2005
(659 letters)
>mm_chr6_51909658_51910716
Length = 1059
Score = 1266 bits (655), Expect = 0.0
Identities = 655/655 (100%)
Strand = Plus / Plus
Query: 5 gaattctattcatataatttttttacagtttcttctaattcttaaattctcacatctctc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctattcatataatttttttacagtttcttctaattcttaaattctcacatctctc 264
Query: 65 agagtacatgcttaatgtgacacacacatataccacacatacactcagacacacacaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agagtacatgcttaatgtgacacacacatataccacacatacactcagacacacacaaaa 324
Query: 125 catacttataggcacatgtattagaaacaattttgaagggctacaatacactcaacaaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catacttataggcacatgtattagaaacaattttgaagggctacaatacactcaacaaac 384
Query: 185 cttgcgagtttttttcttaacagttagcctttttagagtaattaggctgagaatgtaaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttgcgagtttttttcttaacagttagcctttttagagtaattaggctgagaatgtaaaa 444
Query: 245 tgactcagcactacgaggctgatccagcaccagtggggacacagtaaaacatccctgtta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgactcagcactacgaggctgatccagcaccagtggggacacagtaaaacatccctgtta 504
Query: 305 actaagtgccacagaaagactgctagcacttcatatgcaacatgagccaagtcaagtcag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actaagtgccacagaaagactgctagcacttcatatgcaacatgagccaagtcaagtcag 564
Query: 365 acattgttaccaattattaattccaaagagcacaataactatatgttcatatataattat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acattgttaccaattattaattccaaagagcacaataactatatgttcatatataattat 624
Query: 425 gatatgatatgttgtatattatttaatatttatatatgacatatgtaatatttctatatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gatatgatatgttgtatattatttaatatttatatatgacatatgtaatatttctatatt 684
Query: 485 gtatattgtttataggttaatataatatattatatatcacaatattagtatatatattac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtatattgtttataggttaatataatatattatatatcacaatattagtatatatattac 744
Query: 545 ctattagaatatacaggcttttaattttgaaagttacaaactgtctttcttcaattatag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctattagaatatacaggcttttaattttgaaagttacaaactgtctttcttcaattatag 804
Query: 605 tggcatatgctatcataaataacataggcaaataatttacatatgtaaagatgaa 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tggcatatgctatcataaataacataggcaaataatttacatatgtaaagatgaa 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_f01.g1 MSMg01no356_f01.g1 CHROMAT_FILE:
MSMg01no356_f01.g1 PHD_FILE: MSMg01no356_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:00 2005
(449 letters)
>mm_chr6_51945846_51946694
Length = 849
Score = 762 bits (394), Expect = 0.0
Identities = 436/461 (94%), Gaps = 21/461 (4%)
Strand = Plus / Minus
Query: 1 ctgcttttgaaaatgtaactccttttatc-aacataatcctatgacttttaatggaaact 59
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 791 ctgcttttgaaaatgtaactccttttatcaaacataatcctatgacttttaatggaaact 732
Query: 60 gtattcctgggcttttcctagtcagcccctcattacaggtttcagacgactgcataggta 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 731 gtattcctgggcttttcctagtcagcccctcattacaggtttcagacgactgcataagta 672
Query: 120 aggggagtacctgaattattttctcagttgctctttccacttttcagttcttgttattct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aggggagtacctgaattattttctcagttgctctttccacttttcagttcttgttattct 612
Query: 180 cattatcttattggtcttgcttagttttttttttttttttttttttaacttctagaaacc 239
|||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 611 cattatcttattggtcttgcttag--------ttttttttttttttaacttctagaaacc 560
Query: 240 ttggtcttgggactaaattcttttgggtcataagtaagcagttgtctgatgacctttaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttggtcttgggactaaattcttttgggtcataagtaagcagttgtctgatgacctttaaa 500
Query: 300 agtatttactaagtcatttatattacaactcatatagaataatgtcagacgtggttttac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agtatttactaagtcatttatattacaactcatatagaataatgtcagacgtggttttac 440
Query: 360 ttagttaaataggt---------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttctg 410
|||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttagttaaataggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttctg 380
Query: 411 ttgcnng-ggtggaa-ttaatggtcnnactgacctcgtatg 449
|||| | ||||||| ||||||||| ||||||||||||||
Sbjct: 379 ttgc-agtggtggaatttaatggtcaaactgacctcgtatg 340
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space: 368321
Effective search space used: 368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
