BAC Information

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BAC

Clone NameMSMg01-356F03
Chromosome6 (Build37)
Map Location 47,884,545 - 47,885,028
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap2, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212
Downstream geneA230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356F03.T7 (MSMg01no356_f03.b1)MSMg01-356F03.TJ (MSMg01no356_f03.g1)
ACCAG466491AG466492
length726733
length of high quality
(start - end)
578 (45 - 622)484 (75 - 558)
definitionCHROMAT_FILE: MSMg01no356_f03.b1 PHD_FILE: MSMg01no356_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:00 2005CHROMAT_FILE: MSMg01no356_f03.g1 PHD_FILE: MSMg01no356_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCCCCCTTACATTGATTGATTGATTGATTGATTTATATATGAGTAC
ACTGTTGCTGTCTTCAGACACACCAGAAGAGGGCATTAGATCCTGTTACA
GATGGTTGTGAGCCACCATGTGGTTGTTGGGAATTGAACTCAAGACCTCT
GGAAAAGCAGTTGGTGCTCTTACCTGCTGAGCCATCTCGCCAGCTCTCCA
GGTATGATTTTGTCTGAGAGTTTTCTTTGCAGGTCAGCTTCATGTCCTCT
GAGATTGCCTCCATGAGATCAGGCTACAAGCCTATAAGGCATTTTCTCAG
TTAGTGATTGATATGAGAGGTGGTGCCACCCTTGGAATGGTGGTCCTGCA
GGCTGAGCAAGCCATGGAGACCAAGCCAGTAAGCAGCACCCCTCCATGAT
CTCTGCATCAGCTCTTACCTCCAGGTTCCTGCGCTGTTTGAATGCCCATC
CTTACTTCCTTCCATGATGAACAGTGATATTAAAGTGAAAACCAAATAAA
CCCTTCCTCCCCAACTTGCTTCTTGATCATGGTGTCTCATCACAGCAGTA
GTAACTCTAAGACAAGATGGAACCAGTGTAGTGGACTATTGGTTTATGAC
AGACCTGACCATATTTTGGAGAGGATAGTGGAAAGACTTTGAACTTTAGG
CTAAAAGAGAATTGAGAGTTCTGTGN
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGGGACTTTTCAGATGGTATATAAA
TACTTGGGTCCCTAGAGGCAGCGTTGTGGCTGTTGATTGGTTGCTGTTTG
CTAGATAGTAATGAGCAAAGAAGAAACAAGAAATTAGATATCTTGACAGC
AAAGATCACACTTGCCCCAAGGAACTTGATGCCCCCGATCAGCAGGAAGT
AGTCTAAGGACTTCTCCTTTCCCCTCTTCCCTTTTTTCTCTCCTATCTAC
TGTTAGGGGGTTGAAAGGGTGGAAAAAGGATGGAGAAGGGTGGGAAAGAA
AGTAGTCAAAAGACAGGCTGCAATTCTACCTGTGTTCAAAAGCAAATTCT
TCAGTATAGCCTTGAAGGCTTCTACAGCTTATGTTACCATGTCTCTTCAG
TCATGTTGCTATCACATGATTCTTCCTGGCTGAACAAGCCATCTTTGCTT
TTTTGGNGTGTAAGCACCTTTTGAGAGCGTCTCTCCTCTGCACTCATGTG
TGAGCTCACATATGCCATGGCATGCATGTGGACGTCACAAAGCATCTTGG
AGCTCTCTACTCCCACTGCTTGGTAACCCTGATCAAACTCTGGTGTTCAG
TTTTGGCGGCCCTTTCCTTGATTCCCTACGCTATGCTACTTTTGGCCCTT
TTTTGGTTCCGCCTCCTTTTTTTATTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_f03.g1 MSMg01no356_f03.g1 CHROMAT_FILE:
MSMg01no356_f03.g1 PHD_FILE: MSMg01no356_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:01 2005
         (484 letters)



>mm_chr6_47884345_47885228
          Length = 884

 Score =  837 bits (433), Expect = 0.0
 Identities = 471/484 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggggacttttcagatggtatataaatacttgggtccctagaggcagcgttgtggctgtt 60
           ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct: 201 tggggacttttcagatggtgtataaatacttgggtccctagaggcatcgttgtgactgtt 260

                                                                       
Query: 61  gattggttgctgtttgctagatagtaatgagcaaagaagaaacaagaaattagatatctt 120
           |||||||||| ||||| || ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 gattggttgcagtttgttaaatagtaatgagcaaagaagcaacaagaaattagatatctt 320

                                                                       
Query: 121 gacagcaaagatcacacttgccccaaggaacttgatgcccccgatcagcaggaagtagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacagcaaagatcacacttgccccaaggaacttgatgcccccgatcagcaggaagtagtc 380

                                                                       
Query: 181 taaggacttctcctttcccctcttcccttttttctctcctatctactgttagggggttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaggacttctcctttcccctcttcccttttttctctcctatctactgttagggggttga 440

                                                                       
Query: 241 aagggtggaaaaaggatggagaagggtgggaaagaaagtagtcaaaagacaggctgcaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagggtggaaaaaggatggagaagggtgggaaagaaagtagtcaaaagacaggctgcaat 500

                                                                       
Query: 301 tctacctgtgttcaaaagcaaattcttcagtatagccttgaaggcttctacagcttatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 tctacctgtgttcaaaagcaaattcttcagtatagccttgaaggcttctacagtttatgt 560

                                                                       
Query: 361 taccatgtctcttcagtcatgttgctatcacatgattcttcctggctgaacaagccatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taccatgtctcttcagtcatgttgctatcacatgattcttcctggctgaacaagccatct 620

                                                                       
Query: 421 ttgcttttttggngtgtaagcaccttttgagagcgtctctcctctgcactcatgtgtgag 480
           |||||||||||| |||||| || ||||||||||| || ||||||||||||||||||||||
Sbjct: 621 ttgcttttttggtgtgtaaacatcttttgagagcttccctcctctgcactcatgtgtgag 680

               
Query: 481 ctca 484
           ||||
Sbjct: 681 ctca 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)