Query= MSMg01no357_c19.b1 MSMg01no357_c19.b1 CHROMAT_FILE:
MSMg01no357_c19.b1 PHD_FILE: MSMg01no357_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:06 2005
(545 letters)
>mm_chr6_66909637_66910581
Length = 945
Score = 942 bits (487), Expect = 0.0
Identities = 531/549 (96%), Gaps = 8/549 (1%)
Strand = Plus / Minus
Query: 4 ggaattccctagaactactattttaaagggccagaggtatacagctcatttgttaagcgt 63
||||||| || |||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 684 ggaattctctcgaactattattttaaagggccagaggtctacagctcatttgttaagcgt 625
Query: 64 gcttctccagcatgtacaaagctccaggtcctgcaatcctagcacctaagaagcaggaac 123
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcttctccagcgtgtacaaagctccaggtcctgcaatcctagcacctaagaagcaggaac 565
Query: 124 agagggaccagaagttcaaggccaccctttgtggttagcctgggttccatagctctgttt 183
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agagggaccagaagttcaaggtcaccctttgtggttagcctgggttccatagctctgttt 505
Query: 184 caacacatgtgcacaggatttttttgtatacacctatatatgtatatatttagtttatac 243
||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 504 caacacatgtgtacaggatttttttgtatacacctatatatgtatatagttagcttatac 445
Query: 244 atctctctatttagtagaatatagtgatagagaagcaaagaccacagatcactctgat-- 301
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atctctccatttagtagaatatagtgatagagaagcaaagaccacagatcactctgattg 385
Query: 302 ----tgtgtgtgtgtgtgtgtgtgtgtgtgacacacagcctt-ttccttgccttgctgca 356
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 384 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacacacagccttatt-cttgccttgctgca 326
Query: 357 gcccaaacctagggccttatgcataccaggcaagcattttacaaagctctgtctccaact 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcccaaacctagggccttatgcataccaggcaagcattttacaaagctctgtctccaact 266
Query: 417 ctttgcttttatcttagcaaaaccctgtctcaaaaattacaattccttctaatctttcct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttgcttttatcttagcaaaaccctgtctcaaaaattacaattccttctaatctttcct 206
Query: 477 gtgtcacttcagcaaaagcatctctatgtgggattctttgtaatacaacttttatgaaca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gtgtcacttcagcaaaagcatctctatgtgggattctttgtaatacaacttttatgaaca 146
Query: 537 acccactgt 545
|||||||||
Sbjct: 145 acccactgt 137
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_c19.g1 MSMg01no357_c19.g1 CHROMAT_FILE:
MSMg01no357_c19.g1 PHD_FILE: MSMg01no357_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:06 2005
(441 letters)
>mm_chr6_66879887_66880727
Length = 841
Score = 791 bits (409), Expect = 0.0
Identities = 433/450 (96%), Gaps = 15/450 (3%)
Strand = Plus / Plus
Query: 7 ggagacgtatggaggtttgtgttaggcgtctgaaatgttttaaccttgaatattgccaga 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggagacgtatggaggtttgtgttaggcgtctgaaatgttttaaccttgaatattgccaga 266
Query: 67 aatacatcaaaactggccaaagaactattaacagattaattactcacccacgccccgtga 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aatacatcaaaactggccaaagaactattaacagattaattactcacccacgccccgtga 326
Query: 127 ggaggagaagaaaatgtacaacagtattagggcagacaggcgtttgagagtgtttgcact 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggaggagaagaaaatgtacaacagtattagggcagacaggcgtttgagagtgtttgcact 386
Query: 187 gaagctttgcagaaaagtacaggagtgtgagggtccctcaaaaagtcacccatcctcagt 246
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 387 gaagctttgcagaaaagtacaggagtgtgagggtccctcaaaaagtcgcccatcctcagt 446
Query: 247 ttatgttgactgcctgggctagtccaggtagcagagaccctggaatttattcagagttaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttatgttgactgcctgggctagtccaggtagcagagaccctggaatttattcagagttaa 506
Query: 307 attgtgctcatatcccaggagtccagatttctgatcatt-------aaaaaaaaaaaaaa 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 507 attgtgctcatatcccaggagtccagatttctgatcatttaaaaaaaaaaaaaaaaaaaa 566
Query: 360 aggagggagg--------aagggagagaaagaaaagaaaatgaaaggaaagaaaggaaaa 411
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aggagggagggagggaggaagggagagaaagaaaagaaaatgaaaggaaagaaaggaaaa 626
Query: 412 agaanagaaaaaaagaagagagaaagaggc 441
|||| |||||||||||||||||||||||||
Sbjct: 627 agaaaagaaaaaaagaagagagaaagaggc 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space: 359424
Effective search space used: 359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
