Query= MSMg01no357_h14.b1 MSMg01no357_h14.b1 CHROMAT_FILE:
MSMg01no357_h14.b1 PHD_FILE: MSMg01no357_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:28 2005
(508 letters)
>mm_chr6_139371402_139372309
Length = 908
Score = 835 bits (432), Expect = 0.0
Identities = 481/510 (94%), Gaps = 21/510 (4%)
Strand = Plus / Minus
Query: 9 tcagttatccttccttatatgactagcatcttactcattgacccctctcctcagaaccta 68
|||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||
Sbjct: 550 tcagttatccttccttgtatga-------cttactctttgacccctctcctcagacccta 498
Query: 69 taattacgtattcatgtgcactgtcacagggctaatatgaactccttcaggttgagtaga 128
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 497 taattacgtattcatgtgcactgccacagggctaatatgaactccttcaggttgagtaga 438
Query: 129 atatcaagcaaaaactttcctattgaatgatttccattctgtacaattctacagaatgaa 188
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 437 atatcaagcaaaaactttcctattgaatgattcccattctgtacaattctacagaatgaa 378
Query: 189 aactggactaaagtgatcaaaggaaaggcatctgttggttggggctggaagttggaggga 248
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 377 aactggactaaagtgatcaaaggaaaggcatctgttggttggggctggaagtcggaggga 318
Query: 249 gtgggaaggaggacgacccatgccaactggtcaatttaaagaaaaatggttacattattt 308
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtgggaaggaggatgacccatgccaactggtcaatttaaagaaaaatggttacattattt 258
Query: 309 ttactgtgttataattttaagtgtgtgcgtgtgtgtgtgtgt--------------atgt 354
||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 257 ttactgtgttataattttaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgt 198
Query: 355 aagtaaaaattataaaatcatgcttatttctatgggagctaattttgtgtgtttaatttt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aagtaaaaattataaaatcatgcttatttctatgggagctaattttgtgtgtttaatttt 138
Query: 415 gagtgcctgtaaaatacaggaaactataaagagaatactgaagggacaggaaagatagaa 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 gagtgcctgtaaaatacaggaaactataaagagaatactgaagggacaggaaagatagaa 78
Query: 475 aggaagatctgaagaggtgcagggagcaga 504
||||||||||||||||||||||||||||||
Sbjct: 77 aggaagatctgaagaggtgcagggagcaga 48
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_h14.g1 MSMg01no357_h14.g1 CHROMAT_FILE:
MSMg01no357_h14.g1 PHD_FILE: MSMg01no357_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:28 2005
(452 letters)
>mm_chr6_139231111_139231964
Length = 854
Score = 820 bits (424), Expect = 0.0
Identities = 446/454 (98%), Gaps = 2/454 (0%)
Strand = Plus / Plus
Query: 1 aacctctctgtatgcaaactgtatttgctggctttgaacctgcgtctttgtgggaaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacctctctgtatgcaaactgtatttgctggctttgaacctgcgtctttgtgggaaaatg 260
Query: 61 aggcaatgaggacttttctatcagtgtgtctcgctgtggagcttgccatcttttagtgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcaatgaggacttttctatcagtgtgtctcgctgtggagcttgccatcttttagtgat 320
Query: 121 caaaaacactagtcaggctggggatgtagctaatttagtaaagtacgtccctagcatgga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 caaaaacactagtcaggctggggatgtagctaatttagtaaagtacgtccctagcatgaa 380
Query: 181 cagggacttacatttgatccccagcagggcatcaactaggcatggtagtccatgcccata 240
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagggacctacatttgatccctagcagggcatcaactaggcatggtagtccatgcccata 440
Query: 241 tccctaaccttcaggacaaggaggcagaaggcccagaacttcatcgtcatctttggatac 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 tccctaaccttcaggacaaggaggcagaaggcccagaacttcatcttcatctttggatac 500
Query: 301 aaactgagtttggggctagcctgggttatttaagactgtgtctagaagactgttttattt 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaactgagtttggggctagcccgggttatttaagactgtgtctagaagactgttttattt 560
Query: 361 aaacaagtcacgcttttcagattaaaaaaaa--tgatctttgagatttcttcttgcactg 418
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 aaacaagtcatgcttttcagattaaaaaaaaaatgatctttgagatttcttcttgcactg 620
Query: 419 acaataaaaaatgatggggcttgtcatgtgttgt 452
||||||||||||||||||||||||||||||||||
Sbjct: 621 acaataaaaaatgatggggcttgtcatgtgttgt 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 854
Length adjustment: 10
Effective length of query: 442
Effective length of database: 844
Effective search space: 373048
Effective search space used: 373048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
