BAC Information

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BAC

Clone NameMSMg01-358E21
Chromosome6 (Build37)
Map Location 19,385,908 - 19,386,290
singlet/doubletsinglet
Overlap genenone
Upstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358E21.T7 (MSMg01no358_e21.b1)MSMg01-358E21.TJ (MSMg01no358_e21.g1)
ACCAG467993AG467994
length743746
length of high quality
(start - end)		408 (39 - 446)383 (66 - 448)
definitionCHROMAT_FILE: MSMg01no358_e21.b1 PHD_FILE: MSMg01no358_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:32 2005CHROMAT_FILE: MSMg01no358_e21.g1 PHD_FILE: MSMg01no358_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
GAAGATTAACACAGAGAGACCTCTGAGTTCAAGGTCATCTGGGATTAGAG
GCGTGGTAGCACACACCTTTAATCTGGGCTACACCTTCTGCTGGATATCT
ACATAAGGACTTTAGAAGAAGGAAGATTTACTCTCTCTCATCTTTGCCTG
CTTGCTTTGTGGGACTGAGCAACTGCTAGATCCTTGGACTTCCATACACA
GCTGCAGTTGACCATTGTTGGGAGTTGTACTACAGACTAAATTTCATCAA
TAAATAACCTTACTATATAGAGACTACCCATAAGTTCTGCGACTCTAGAG
AAACCTGACTTATACAAAAGAGTCCCAATTAACAAATAATCAAATTCTCA
TTTATCAAGTTGAACAAATACAATATATACCATGATGATCAGTATGCACA
ATATTTAATAACAAGGTATAAAATCAGATTCAGAGATGAAGTACCTAACT
TTTCAGAAGTATGTTGTTAGAAAAGATAGTAAAAAACTCTTAAGAGCACT
GAAGAAGCATACTAACTTCTATGTTTCAATGTGGTTTAAAGCCAAAATCT
CTTATGACAACTAAAAGCTTAAGGCGCAAAAAACCAAAGGATTTCTGCTC
CCCTTTTATGGCTTTTTTAAAACCTTCCTTTGGTATTCCAGGGGGCCCTC
CCCTTTTTTTAAAAGCTAAAAAAAAAAATTTGAATTTTTCCCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATTTAAATAAATGCAATACACTGATAAACTTAAGC
AAATAAACTTGTAGAGATTTTTGTTGTTTTTCATAATTGTACGCATAAGT
TAGCTTTAGATTGCAGCTAATGAACGGATGTGAAGACGTTCCGTGAGAAA
TACAGGTGGGCTGGAGGAGGAAGTTCACTCACACTGAATAAACACAGATA
ATTATGCATCTCATGGCTATAATTATTATATGTATTTACAAATTAAGTGA
AATTTAAGAACTCTAATTCATGTGTTTCTTTTAGAGTGAAAATAATAAAG
AAATGTGTTACTTTAATTAGCAGTGTGTGATTAGTTGATTAATAGCCCAT
GTTGTTGAATTTGCTATCCCAGTTTAACATTACTTTCAGGAAATGCTCAC
CTGATTTGAATCCATAGGAAATTATTCTTTTAGACNAGATTGAGATTTTG
CTTAAAACAGGTGATCATTTTTTGTAGGTCCTTTGGTCAACTCAGCCGCT
TTCCCACAAATCCAGTGGTAAATCAAGGGCCCGCCTAAGGTTATATTGTC
CTGGGGCAAATTGTTTAAAAGGCCCTCCTCCATGCCTGGTTCCCCCTAAA
CAAGTTTTGGGTGTTTTTTTATCAAATTTTTTCCGTTCCAACATTGGAAA
AAAAAACTTGTTTTTCTTTGGTCCTTCCCCCCCCCTCTTAATCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_e21.g1 MSMg01no358_e21.g1 CHROMAT_FILE:
MSMg01no358_e21.g1 PHD_FILE: MSMg01no358_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:32 2005
         (383 letters)



>mm_chr6_19385708_19386490
          Length = 783

 Score =  710 bits (367), Expect = 0.0
 Identities = 379/383 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttaaataaatgcaatacactgataaacttaagcaaataaacttgtagagatttttgtt 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 583 atttaaataaatgcaatacactgataaacttaagcaaataaatttgtagagatttttgtt 524

                                                                       
Query: 61  gtttttcataattgtacgcataagttagctttagattgcagctaatgaacggatgtgaag 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gtttttcgtaattgtacgcataagttagctttagattgcagctaatgaacggatgtgaag 464

                                                                       
Query: 121 acgttccgtgagaaatacaggtgggctggaggaggaagttcactcacactgaataaacac 180
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 463 acgttccgtgagaaatacaggtgggctggaggaggaagttcacaaacactgaataaacac 404

                                                                       
Query: 181 agataattatgcatctcatggctataattattatatgtatttacaaattaagtgaaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agataattatgcatctcatggctataattattatatgtatttacaaattaagtgaaattt 344

                                                                       
Query: 241 aagaactctaattcatgtgtttcttttagagtgaaaataataaagaaatgtgttacttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aagaactctaattcatgtgtttcttttagagtgaaaataataaagaaatgtgttacttta 284

                                                                       
Query: 301 attagcagtgtgtgattagttgattaatagcccatgttgttgaatttgctatcccagttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 attagcagtgtgtgattagttgattaatagcccatgttgttgaatttgctatcccagttt 224

                                  
Query: 361 aacattactttcaggaaatgctc 383
           |||||||||||||||||||||||
Sbjct: 223 aacattactttcaggaaatgctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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