BAC Information

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BAC

Clone NameMSMg01-358N24
Chromosome6 (Build37)
Map Location 40,679,013 - 40,679,484
singlet/doubletsinglet
Overlap geneMgam
Upstream geneMrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138
Downstream geneEG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358N24.T7 (MSMg01no358_n24.b1)MSMg01-358N24.TJ (MSMg01no358_n24.g1)
ACCAG468426AG468427
length740734
length of high quality
(start - end)		471 (38 - 508)449 (75 - 523)
definitionCHROMAT_FILE: MSMg01no358_n24.b1 PHD_FILE: MSMg01no358_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:15 2005CHROMAT_FILE: MSMg01no358_n24.g1 PHD_FILE: MSMg01no358_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:15 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAA
GGCAGGTTATCAGTCAGAGACAGCCTGAACATCAATTATTTCCACATGCA
AAATAAGTTGTACTTCTGTTACATATGTGTAAGGGCCTTAGGTCCAGGCC
ATGCATGCTCTTTGATTGGTGGTTCAGGTTAGCTCTGGTGGGCCAAGGTT
AGTTTACTCTGTAGGTCTTCTTGTAATGTCCTTAACCACTCTGGCTCCCT
CATTCCTTCCCCTACACTTCCACTAGACTCCTCATGCTCTGCCTATTGTT
TGGCGGTGGGTGTCTGCATTTGTTTTCATCCACTGCTGGATGAAGCCTCT
CAGGACACAATTATGCTAGGCTCCTGTCTTCAGGCATAGCTAAATATCAT
TAAAAGTCTCAGGGGTTGGCTTTCTCATGGAATGAGTCTCAAGTTGGGCC
AGTCATTGGTTGGNTATTCTCTCGCTCTCTTCTCCATCTTTATCCCTGCT
TCTTGTANGCAGGACAAATTTTGGGTTGAAGATTTTGTGGGTGGGTTGGT
GNCTTCCTCCCCCCCCANGAAAGTCCTGACTAACTACCGGAAGGGAGCTC
CTTCGGGATCAAATCCTCTCGCTGGTAGAAACCCACGTACAATCCCCCCC
AAAAAATCTGGGAGTTTTTTTCCCGGACACCAAATGGCCCCCGGAATTTT
GTTTTTTTCTCAATTTTCTTTTCCCCACCCGGAAATTCCN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGAAGACATATTTAAACTATATAAC
ATCTTTAAAATATCATATACTAAAGAAAATTATATATGGGACCCCTAGAT
TATTTGTAATGGACTGGGAAACATCAGCATACTTTAAAAAAAAACACTAA
AACATTCTATATGAGCTATAATGGAAATTAGTCCCTAAGCAAAAAGAATA
ATCAAAATAATATTGAAGACTATGATTTATAGGAAAGGCATTAATGGATT
TAAAGATTCACCAGGTAACACAGACAGCCGGAATGCTCTCAAAAACTGGG
AATATATATATATATATATATGCAGTGAAATAATATGGATGAGAAAGCTG
ACATCATACCTTGGTCCCAATGGTGTTGTGGTTCCTGGAGAAGGGATAAA
AGGCGCCCAGCTGCATCCAGCGAACACACATCTCATACTCAGCATCTTGA
AAGAACCCACAGATGTCTGACCCGGTCTGAAACAACATGGAACAAAGTCA
GCTCTTGGTGCTTTCTAAAGACACTGCTACCTTCCTAGGGAGGAGGAGCA
TGTTAAAGACACTTACATAGGATATGCCGAAAAAGCTGAAATCCTCATGC
CTGCANTGAGAGATGCAACAGGGTCAACAAGGAAAATTTCTGGGCCCTCT
TCCCCTTCCCAGGGAATTATTCCCAACCTGGCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_n24.g1 MSMg01no358_n24.g1 CHROMAT_FILE:
MSMg01no358_n24.g1 PHD_FILE: MSMg01no358_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:15 2005
         (449 letters)



>mm_chr6_40679009_40679858
          Length = 850

 Score =  777 bits (402), Expect = 0.0
 Identities = 444/472 (94%), Gaps = 23/472 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaagacatatttaaactatataacatctttaaaatatcatatactaaagaaaattata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ttgaagacatatttaaactatataacatctttaaaatatcatatactaaagaaaattata 417

                                                                       
Query: 61  tatgggacccctagattatttgtaatggactgggaaacatcagcatacttt-aaaaaaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 416 tatgggacccctagattatttgtaatggactgggaaacatcagcatactttaaaaaaaaa 357

                                                                       
Query: 120 acactaaaacattctatatgagctataatggaaattagtccctaagcaaaaagaataatc 179
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 356 acattaaaacattctatatgagctataatggaaattagtccctaagcaaaaagaataacc 297

                                                                       
Query: 180 aaaataatattgaagactatgatttataggaaaggcattaatggatttaaagattcacca 239
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aaaataatattgaaaactatgatttataggaaaggcattaatggatttaaagattcacca 237

                                                                       
Query: 240 ggtaacacagacagccggaatgctctcaaaaactgggaatatatatatatatatatat-- 297
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  
Sbjct: 236 ggtaacacagacagccggaatgctctcaaaaactggtaatatatatatatatatatatat 177

                                                                       
Query: 298 --------------------gcagtgaaataatatggatgagaaagctgacatcatacct 337
                               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 atatatatatatatatatatgcagtgaaataatatggatgagaaagctgacatcatacct 117

                                                                       
Query: 338 tggtcccaatggtgttgtggttcctggagaagggataaaaggcgcccagctgcatccagc 397
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 116 tggtcccaatggtgttgtggttcctggagaaggggtaaaaggcgcccagctgcatccagc 57

                                                               
Query: 398 gaacacacatctcatactcagcatcttgaaagaacccacagatgtctgaccc 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  gaacacacatctcatactcagcatcttgaaagaacccacagatgtctgaccc 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 850
Length adjustment: 10
Effective length of query: 439
Effective length of database: 840
Effective search space:   368760
Effective search space used:   368760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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