BAC Information

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BAC

Clone NameMSMg01-359N24
Chromosome6 (Build37)
Map Location 58,556,793 - 58,557,123
singlet/doubletsinglet
Overlap geneAbcg2
Upstream geneHerc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954
Downstream geneHerc3, Nap1l5, D430015B01Rik, Tigd2, Gprin3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359N24.T7 (MSMg01no359_n24.b1)MSMg01-359N24.TJ (MSMg01no359_n24.g1)
ACCAG469185AG469186
length807798
length of high quality
(start - end)
457 (25 - 481)331 (55 - 385)
definitionCHROMAT_FILE: MSMg01no359_n24.b1 PHD_FILE: MSMg01no359_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:28 2005CHROMAT_FILE: MSMg01no359_n24.g1 PHD_FILE: MSMg01no359_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:28 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTAAGTATCTGTAGT
TAAAGAAAAAAAAACTTTGGAACCTAAAATTCACAGTATTTTTATGGATC
CAGAGAAATTTTAATTAGGGAATAGAATTAAAGCTACAATAAAACACTTA
AACTATTCTTGGTGAGAGAGAGTAGATTGAAATCTTTTCAAGAGAAACCT
TAGAAAGTCACTAACAGCAAGGATCTCCTTTTGAGTAAACTCAGCAGCAA
GGGAATATTCATTTTACAAAGTACAAAGGAGAAAGAAAGATTTCATGTAG
AAATATCAACTTATTGTGGACAATTAACTTAAAAACTTTCTAGTACTTAG
CAACAGAAATGTCAAAAGAATGTATATGAATGTGTATGTGTAATAATGCA
AATTTTAATTAAATCATATGAACAATCCTGCTTTGTTATTTGAAATACTA
AAGTTTAATTTTTAAGGAAATTCATTCATTCATTCATTCATTCATTCATT
TAATAACAACCAGGAAGCCTCTCACAGGGTGTCATCTCACTTCCTTTAAT
TTTCTCATCCGAGAAGGGGCCCCCCCCCTTTGATTTACCCCATTTAGGCC
CATAAGACTCTGCAGGGTAAGGTGGGTCCTCTCCACTGAGGGTAAAAAGG
AAATTCTGTTGGGAAAGGATTCCTTGAAAAAAAAAAATTTTGGGAAACCC
CACCCATTGTTGGGAGAAAACCAATGGGGGATGGGACGGGGATTCTGCTA
CTTGTGTCGGGATTTTATTTTCATAAAAACCTCTTTTTTAAAAAAAATAA
CCGGCGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGATAGCCATTGGGGAAATGTACATGTTGATGAAGTCAAACATTGT
ACCCTGCTGGTGTTTTGTGAAGACTCTTCAATGATTTTCAAAGAAATCAA
ATCGAAACGTCTTTGGTGATTATACTTTAGAGAAGTGAGAAGGTTTTCGG
GTTTCCTGCCAGTGCGAGCTGAAGAAAAGGGAACTCCAGGGATTCTTTGG
ACATTTCCTTTTGTGTCCCTGCTACTGGATGTGCCTCAGGAAAAAGCAAA
GATCTTCTGGCCAAGGAGGAAGCAACCATGAGAAAGCTAAGCCCACACTA
AGAACTGGCAGTACCTTCAGTGACCCACCAGCATTGTTCAAGCCCAACCC
ATCTTCCTGTTTTCATGGAACTTGCAATCATATTTTGCATTTAACTGTCA
CATATTGCAACAACTTGGGACTTGCTATCAAACTTATTTCTATACAAACT
CCTCCACTCTACCCAATTTAAATTACGATTGGGCAAACGAGCATTAGTCC
TAATTTAACCTATTCAAGCTGAACAGGCTTTGTTTTTCTGTTATGGTCTT
TTGAGCTAACCCCAATTTTTAAAAACCTGGAGTTATTTTAAAATCCTCTA
AATACAAGTATCAGATAATCAAGCTTTTTTGGGGTTTTTCTAATACCATT
TTTCTTTCCTTGGGGAGGGTTTGGGTATATTCTTTTCCTGTTTTGGGGGA
CAATTCTGTTTCCATTTATACCTCCTCCTTCGTGTTTTTTCATACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_n24.g1 MSMg01no359_n24.g1 CHROMAT_FILE:
MSMg01no359_n24.g1 PHD_FILE: MSMg01no359_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:28 2005
         (331 letters)



>mm_chr6_58556593_58557323
          Length = 731

 Score =  601 bits (311), Expect = e-176
 Identities = 326/331 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatagccattggggaaatgtacatgttgatgaagtcaaacattgtaccctgctggtgtt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 agatagccattgggaaaatgtacatgttgatgaagtcaaacattgtaccctgctggtgtt 472

                                                                       
Query: 61  ttgtgaagactcttcaatgattttcaaagaaatcaaatcgaaacgtctttggtgattata 120
           ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 471 ttgtgaagacttttcaatgattttcaaagaaatcaaatcgaaacatctttggtgattata 412

                                                                       
Query: 121 ctttagagaagtgagaaggttttcgggtttcctgccagtgcgagctgaagaaaagggaac 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 411 ctttagagaagtgagaaggtttttgggtttcctgccagtgcgagctgaagaaaagggaac 352

                                                                       
Query: 181 tccagggattctttggacatttccttttgtgtccctgctactggatgtgcctcaggaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tccagggattctttggacatttccttttgtgtccctgctactggatgtgcctcaggaaaa 292

                                                                       
Query: 241 agcaaagatcttctggccaaggaggaagcaaccatgagaaagctaagcccacactaagaa 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agcaaagagcttctggccaaggaggaagcaaccatgagaaagctaagcccacactaagaa 232

                                          
Query: 301 ctggcagtaccttcagtgacccaccagcatt 331
           |||||||||||||||||||||||||||||||
Sbjct: 231 ctggcagtaccttcagtgacccaccagcatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)