Query= MSMg01no360_n04.b1 MSMg01no360_n04.b1 CHROMAT_FILE:
MSMg01no360_n04.b1 PHD_FILE: MSMg01no360_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:40 2005
(535 letters)
>mm_chr6_108096403_108097337
Length = 935
Score = 982 bits (508), Expect = 0.0
Identities = 526/532 (98%)
Strand = Plus / Minus
Query: 4 ggaattcaaacacatgtttctgtgggggccgtacttatacaaaccaccacagttgtcacc 63
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 786 ggaattcaaacacatgaatctgtgggggtcgtacttatacaaaccaccacagttgtcacc 727
Query: 64 gtgctctcggaagtcgaggacaagaatctaacttactgggttgttctcatttttaagaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gtgctctcggaagtcgaggacaagaatctaacttactgggttgttctcatttttaagaca 667
Query: 124 aggtcaggctagcaccggacacctgagactctgagtgttgcacactgtgaacctaaggag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 666 aggtcaggctagcaccggacacctgagactctgagtgttgcacactgtgaacctagggag 607
Query: 184 atggagggatgttttgccattctaccgttccaccatcactaattcattttggttttaatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 atggagggatgttttgccattctaccgttccaccatcactaattcattttggttttaatg 547
Query: 244 cttagcagctcttagcatttcaagaaggatttggcttgtccacttgttttcatgtgaggt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cttagcagctcttagcatttcaagaaggatttggcttgtccacttgttttcatgtgaggt 487
Query: 304 tcctgggaggaagcttggttagtgtgattcatgtgaccttgagcagtgagaattccattt 363
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 486 tcctgggaggaagcttggttagtgtgattcatgtgaccttgaacagtgagaattccattt 427
Query: 364 cccacactgccctgctcacatataatacgttagtaactaagagggtgctaccttccagat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cccacactgccctgctcacatataatacgttagtaactaagagggtgctaccttccagat 367
Query: 424 tctacttcagatattctcttatttaaagggggagggtgaacctttgatgggcactgttac 483
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 366 tctacttcagatattctcttatttaaagggggagggcgaacctttgatgggcactgttac 307
Query: 484 ttccctgttgaggactaacagcccaggaaggttaacatggtacctcccatgt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttccctgttgaggactaacagcccaggaaggttaacatggtacctcccatgt 255
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_n04.g1 MSMg01no360_n04.g1 CHROMAT_FILE:
MSMg01no360_n04.g1 PHD_FILE: MSMg01no360_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:40 2005
(551 letters)
>mm_chr6_107927197_107928149
Length = 953
Score = 992 bits (513), Expect = 0.0
Identities = 543/553 (98%), Gaps = 2/553 (0%)
Strand = Plus / Plus
Query: 1 aggattttgtagagtggcaatggccgctattcattacgctaaacactgaagaactttgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 aggattttgtagagtggcaatggccgctattcattacgctaaacactgaagaactctgat 260
Query: 61 tataatctattagagtaggtaagcattactgagaaggagcagagggatggaaagcccagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tataatctattagagtaggtaagcattactgagaaggagcagagggatggaaagcccagc 320
Query: 121 tggagacctcggatgggtgggggctggcaacaggcttagatgtattggagactgaaaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggagacctcggatgggtgggggctggcaacaggcttagatgtattggagactgaaaaag 380
Query: 181 ac-tgagttagggcaagcagctgacatctgactctaattagaggagcgtatttcaacaca 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatgagttagggcaagcagctgacatctgactctaattagaggagcgtatttcaacaca 440
Query: 240 gagaagtatgacttgaaacctataagaaaattcactagccacagatgagtatcaagcaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaagtatgacttgaaacctataagaaaattcactagccacagatgagtatcaagcaca 500
Query: 300 aaaataaaatgacccaaagacactgatatcaaaactctcataaagcgtaaagagaacttg 359
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 501 aaaataaaatgacccaaagacattgatatcaaaactcttataaagcgtaaagagaacttg 560
Query: 360 agtaactctatcccaggttacaataataaaaaacct-cacaaactcacaacacatgtgcc 418
||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 561 agtcactctatcccaggttacaataataaaaaaacttcacaaactcacaacacatgtgcc 620
Query: 419 ctcagatgtctctcttggcctctgaatcataatctcctcatacaagtaggagaaaaaaaa 478
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 621 ctcagatgtctctcttggcctctgaatcataatctcctcatacaaataggagaaaataaa 680
Query: 479 aactcttctgaaaagttgtgaaattatttcaccagataatgggttacaaattggcatgta 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 681 aactcttctgaaaagttgtgaaattatttcaccagataatgggttacaaattggcatgca 740
Query: 539 tatgttaacttgt 551
|||||||||||||
Sbjct: 741 tatgttaacttgt 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 953
Length adjustment: 10
Effective length of query: 541
Effective length of database: 943
Effective search space: 510163
Effective search space used: 510163
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
