BAC Information

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BAC

Clone NameMSMg01-361A08
Chromosome6 (Build37)
Map Location 66,987,227 - 67,186,402
singlet/doubletdoublet
Overlap geneGadd45a, E230016M11Rik, EG667310
Upstream geneLOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837
Downstream geneLOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361A08.T7 (MSMg01no361_a08.b1)MSMg01-361A08.TJ (MSMg01no361_a08.g1)
ACCAG470055AG470056
length763762
length of high quality
(start - end)		582 (51 - 632)452 (82 - 533)
definitionCHROMAT_FILE: MSMg01no361_a08.b1 PHD_FILE: MSMg01no361_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:55 2005CHROMAT_FILE: MSMg01no361_a08.g1 PHD_FILE: MSMg01no361_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,185,824 - 67,186,402)(66,987,227 - 66,987,678)
sequence
NNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAGATCTGCC
TGCCTCTGTCTCCAAGTGCTGGGATTAAAGGCGTGCGCTACCACTGCTCA
GCAAGGTTTTAATTCCTTGTCCTAAACACGAGTTTTATAGTACCTGATAG
AAAACACTCATAGTTGATGTTTCCTACATGAGTATATGGAAATAATTGAA
TAAAGAGGTGACTCAGATGGTTTGCTGCACTCATATTTTGTTGCAATTTA
CAGGCAAAAATACCTCTGTGGGAGAGAGATGTTTTAATCTAGCATAAAAG
ATGCTGAGAGGTAGGGGGTATGTTCTCCAGCAAACATTCCCAACTCTGAA
GTTGCCATGTGCATTGAACTATTTCCCATCATCAACCATAATAATGCTGA
GGAGGACGTTAATCATGCTGTTTATAGGTTTGTAAATGCATTTCTTCCAA
AGACCTCAAGTGTTTAATGGACATGACCTAATTTACCCTCACAAGTCTAG
CCTCCTTTAATAGATGAGGAAACCGAGGCATAAAGAAGCTGAGTAACTTC
TTCAAGGTCAAGCATGTTCCTAGGGAACGGAGCCAGATGCCAGACCTCTG
CTGTTTCTGCCTAGCTCTGTCTCTCTAGACCTTGAGATGATGTGCATGCA
TCCCCATGGACTAAGTGCTTCTGTTGCTACCCCCTGCCCATTGATAACCA
GTGATCAGGAAAG

TTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCAAAGTCATATTGCAA
GTGCGAGTCCCTCCCTCGGCGCGCGGGCTGCTCCTGGCCCCCACAGTGCG
CGGCGCCGGCTCTGCGCTCGCTCCCACCCTCCCTTCTCCGCTCCGGCCGG
CCGGCTGCTCGCCTAGCCTCGCTGGGGAACTCTGCACTGCTGCCTCGGGG
CCACTGGAGGACAAAGGGCCCGATTCCGGAGATATGGGGCTAGCCCTCAG
CCAACCAGGTCCAGCTTCATTTGCATGCAGTCAGGCCATTGGGTTATGCA
AATTAGCAGACGTTGACACTCAGACCCTCGCTCCACCAAAGCAAGGCAGA
GTTGAGCGGAAAGGGGCGGAGCTACGCGGGAGGGAGCCCACGGGACGAAG
GTGGTGCTGAAACCGGGTTGGTGGGGTCCTGAGCCAGCTCTAGGTAGTTT
GTGGAGCCATCTGGTGCGGAGGGCTTTGCAGTGGTTCAAGTGTCCTTATT
TCTGACTGAAACAGTCTGCCAATTGTTTTTCTGGCTGCGTATATCTTTTG
ATTGTCGTTTTGTGCCCTTCGCGCTAAAGGCTCTGCTTCTTAAATTTTAC
TTCCCACGTATAATGGCCCCCTCGTCAATCTCGTTGCATTTTACCCATTT
CTTAAATGTCTATACATTCCCCGCCAAAGCTTTCTTTCTCTGCCTACTAC
CCACATTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_a08.b1 MSMg01no361_a08.b1 CHROMAT_FILE:
MSMg01no361_a08.b1 PHD_FILE: MSMg01no361_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:55 2005
         (582 letters)



>mm_chr6_67185617_67186598
          Length = 982

 Score = 1112 bits (575), Expect = 0.0
 Identities = 578/579 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactttgtagaccaggctggcctcaaactcagagatctgcctgcctctgtctcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ggaattcactttgtagaccaggctggcctcaaactcagagatctgcctgcctctgtctcc 727

                                                                       
Query: 64  aagtgctgggattaaaggcgtgcgctaccactgctcagcaaggttttaattccttgtcct 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aagtgctgggattaaaggcatgcgctaccactgctcagcaaggttttaattccttgtcct 667

                                                                       
Query: 124 aaacacgagttttatagtacctgatagaaaacactcatagttgatgtttcctacatgagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aaacacgagttttatagtacctgatagaaaacactcatagttgatgtttcctacatgagt 607

                                                                       
Query: 184 atatggaaataattgaataaagaggtgactcagatggtttgctgcactcatattttgttg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 atatggaaataattgaataaagaggtgactcagatggtttgctgcactcatattttgttg 547

                                                                       
Query: 244 caatttacaggcaaaaatacctctgtgggagagagatgttttaatctagcataaaagatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 caatttacaggcaaaaatacctctgtgggagagagatgttttaatctagcataaaagatg 487

                                                                       
Query: 304 ctgagaggtagggggtatgttctccagcaaacattcccaactctgaagttgccatgtgca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctgagaggtagggggtatgttctccagcaaacattcccaactctgaagttgccatgtgca 427

                                                                       
Query: 364 ttgaactatttcccatcatcaaccataataatgctgaggaggacgttaatcatgctgttt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttgaactatttcccatcatcaaccataataatgctgaggaggacgttaatcatgctgttt 367

                                                                       
Query: 424 ataggtttgtaaatgcatttcttccaaagacctcaagtgtttaatggacatgacctaatt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ataggtttgtaaatgcatttcttccaaagacctcaagtgtttaatggacatgacctaatt 307

                                                                       
Query: 484 taccctcacaagtctagcctcctttaatagatgaggaaaccgaggcataaagaagctgag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 taccctcacaagtctagcctcctttaatagatgaggaaaccgaggcataaagaagctgag 247

                                                  
Query: 544 taacttcttcaaggtcaagcatgttcctagggaacggag 582
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 246 taacttcttcaaggtcaagcatgttcctagggaacggag 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no361_a08.g1 MSMg01no361_a08.g1 CHROMAT_FILE:
MSMg01no361_a08.g1 PHD_FILE: MSMg01no361_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:56 2005
         (452 letters)



>mm_chr6_66987027_66987878
          Length = 852

 Score =  851 bits (440), Expect = 0.0
 Identities = 449/452 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccaaagtcatattgcaagtgcgagtccctccctcggcgcgcgggctgctcctggcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccaaagtcatattgcaagtgcgagtccctccctcggcgcgcgggctgctcctggcccc 260

                                                                       
Query: 61  cacagtgcgcggcgccggctctgcgctcgctcccaccctcccttctccgctccggccggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacagtgcgcggcgccggctctgcgctcgctcccaccctcccttctccgctccggccggc 320

                                                                       
Query: 121 cggctgctcgcctagcctcgctggggaactctgcactgctgcctcggggccactggagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cggctgctcgcctagcctcgctggggaactctgcactgctgcctcggggccactggagga 380

                                                                       
Query: 181 caaagggcccgattccggagatatggggctagccctcagccaaccaggtccagcttcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaagggcccgattccggagatatggggctagccctcagccaaccaggtccagcttcatt 440

                                                                       
Query: 241 tgcatgcagtcaggccattgggttatgcaaattagcagacgttgacactcagaccctcgc 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tgcatgcagtcaggccattgggttatgcaaattagcagacgttgacacccagaccctcgc 500

                                                                       
Query: 301 tccaccaaagcaaggcagagttgagcggaaaggggcggagctacgcgggagggagcccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccaccaaagcaaggcagagttgagcggaaaggggcggagctacgcgggagggagcccac 560

                                                                       
Query: 361 gggacgaaggtggtgctgaaaccgggttggtggggtcctgagccagctctaggtagtttg 420
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggacgaaggtggtgctgaaacccggttggtggggtcctgagccagctctaggtagtttg 620

                                           
Query: 421 tggagccatctggtgcggagggctttgcagtg 452
           ||||||| ||||||||||||||||||||||||
Sbjct: 621 tggagccttctggtgcggagggctttgcagtg 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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