BAC Information

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BAC

Clone NameMSMg01-361J08
Chromosome6 (Build37)
Map Location 67,420,632 - 67,421,190
singlet/doubletsinglet
Overlap geneIl23r
Upstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890
Downstream geneTacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361J08.T7 (MSMg01no361_j08.b1)MSMg01-361J08.TJ (MSMg01no361_j08.g1)
ACCAG470477AG470478
length802753
length of high quality
(start - end)		72 (64 - 135)560 (82 - 641)
definitionCHROMAT_FILE: MSMg01no361_j08.b1 PHD_FILE: MSMg01no361_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:40 2005CHROMAT_FILE: MSMg01no361_j08.g1 PHD_FILE: MSMg01no361_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCAATATTTGCGCCGCTAATACACTCCTATCCNAGAGGACCGCGGAAT
CTGTGATTTTCTGGGTTCTGACTACACTATGCCCATTGTACTCATGAAGT
CATTATAGTGACCTGCACAAGACATGTAGAAGATCAACCTCAAGCCAACC
CCATCCNTCAATTGTGGATTTATTGGGTTACAAAAAGAAAAAAAGGAGAG
GAACATGAATGGGGAGAGAGATGTGATGGGTTCCTGAGGGAAGTGAGAAA
AGGACCTTGAGACTGACAGATCATGATACCTGGTTTCCTGTATGAAAATT
TCCAAAATTAATTAAAAAATTTCCTTTAAAAAAAAATTGGGGAAATAAAT
TTAAAAAAAATTTTTTTTTAATCTCAAATACCCAAAATTTTTTTTTTCCC
CCAAAAATTTTAATGGTGGGAATATAAAAAAAGGACCCAAAAATTTTTTT
TTTTGTAAAAAAATGTAATATGGAAAATTTTTTTTCCCTTTTTTCCAAAA
AAAAAAAAACTTTTTAACATTTTTTTAATAAATACAAAAAAAAATGGGGG
GAGAAAACCCCCACAAAGGGGGAAAAAAACAAACAATTTTTTTTTTTAAA
AACCCTCCCCCCCTCTTTTTTGTAAAAAAAGAAAAAAAATAAATTCTTTT
TTTTTTTTCCTTCCCTCTTTTTTTTCCTTTTCAAAAAAAATTATTTTTCT
TTCCTATTCCCTCTTTACAAAATAAATTGGTGGCCCTTATTTAAATCAAA
ATAAACCCTCCCCCTCCCCCTCTCACTTTATATACAGTGTTTGGGGTGGG
GG

NTTTTGCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAGAGGTGATTATTGTG
GGATTTATAATTTCTGATGAAGACATGGTGTATTGTTCTTTATGTTTCTT
TATATCTTGGGACTTGAGCACCTGGTGTAAGCAATTATTTGGACCTTTTG
TCATCTTTGGCTTTTAATGAAAATGTTTGCAATGTTCAAAAGTGCATACA
GGCTTCACCACTTTCTCTGTTAGTATTCAAGGAACCAGCCTCAGTCTTCA
AGTACTCCTTTGAGAGTAAAATACTATTTGCAATAACAATCACTAAGTCT
TCTATAAACATATAGTAATAGTTAAATATCAAAAGAAATCATACCCTTAA
ACCTCAATCATTTTAAGAAATACAGGAACATTGATAGTAGGGTATGCATT
ACAGAATTAATTACTTCGTGAATGTCTGCAAATAAAAAAGCAGAGTGAGT
CTAGTGATTGGTATTCTGAGAGAGAAAAGCACCAAGGGGGAACTAAATAG
ACAAGGTGGATAGTAGAAAAAAAGTGGAAGAGGCAGTTCTTTTTTTAAAA
AAGATTATATGTATGTATGTATATATATATATATATATATGTGNNGNGGT
ATATTTATTTATATACATATTTATGTGNCGTGCGTGGGGACATTGTAACT
GTGTTCTGGGTGGTGACCCTCCTGATCGTCGTTGGGATTACAACTCAGAA
CCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_j08.g1 MSMg01no361_j08.g1 CHROMAT_FILE:
MSMg01no361_j08.g1 PHD_FILE: MSMg01no361_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:40 2005
         (560 letters)



>mm_chr6_67420467_67421426
          Length = 960

 Score = 1027 bits (531), Expect = 0.0
 Identities = 552/559 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attagaggtgattattgtgggatttataatttctgatgaagacatggtgtattgttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 724 attagaggtgattattgtgggatttataatttctgatgaagacatggtgtattgttcttc 665

                                                                       
Query: 61  atgtttctttatatcttgggacttgagcacctggtgtaagcaattatttggaccttttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 atgtttctttatatcttgggacttgagcacctggtgtaagcaattatttggaccttttgt 605

                                                                       
Query: 121 catctttggcttttaatgaaaatgtttgcaatgttcaaaagtgcatacaggcttcaccac 180
           |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 604 catctttggcttttaatgaaaatgtttgcagtgttcaaaactgcatacaggcttcaccac 545

                                                                       
Query: 181 tttctctgttagtattcaaggaaccagcctcagtcttcaagtactcctttgagagtaaaa 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 544 tttctctgttagtattcaaggaaccagcctcagtcttcaagtactcttttgagagtaaaa 485

                                                                       
Query: 241 tactatttgcaataacaatcactaagtcttctataaacatatagtaatagttaaatatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tactatttgcaataacaatcactaagtcttctataaacatatagtaatagttaaatatca 425

                                                                       
Query: 301 aaagaaatcatacccttaaacctcaatcattttaagaaatacaggaacattgatagtagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aaagaaatcatacccttaaacctcaatcattttaagaaatacaggaacattgatagtagg 365

                                                                       
Query: 361 gtatgcattacagaattaattacttcgtgaatgtctgcaaataaaaaagcagagtgagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gtatgcattacagaattaattacttcgtgaatgtctgcaaataaaaaagcagagtgagtc 305

                                                                       
Query: 421 tagtgattggtattctgagagagaaaagcaccaagggggaactaaatagacaaggtggat 480
           ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tagtgatcggtattccgagagagaaaagcaccaagggggaactaaatagacaaggtggat 245

                                                                       
Query: 481 agtagaaaaaaagtggaagaggcagttctttttttaaaaaagattatatgtatgtatgta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 244 agtagaaaaaaagtggaagaggcagttctttttttaaaaaagattatatgtatgtatata 185

                              
Query: 541 tatatatatatatatatat 559
           |||||||||||||||||||
Sbjct: 184 tatatatatatatatatat 166


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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