BAC Information

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BAC

Clone NameMSMg01-361K08
Chromosome6 (Build37)
Map Location 38,474,809 - 38,475,272
singlet/doubletsinglet
Overlap genenone
Upstream geneAkr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik
Downstream gene3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361K08.T7 (MSMg01no361_k08.b1)MSMg01-361K08.TJ (MSMg01no361_k08.g1)
ACCAG470524AG470525
length7521,219
length of high quality
(start - end)		582 (35 - 616)---
definitionCHROMAT_FILE: MSMg01no361_k08.b1 PHD_FILE: MSMg01no361_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:45 2005CHROMAT_FILE: MSMg01no361_k08.g1 PHD_FILE: MSMg01no361_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGGAAATGGGTCAC
GGTCGGTCCCATCCTGTGTGCCACCGTGGCAGTGACTAGCTTCCTGGCTA
TGCATACCAGACTGTGGGGAAATGGTGTAGAAGAGCGTGGGGGCTGGAGA
GAGGGCTGCGCTCCTGCTCTTCCCACACTCACTCCCCACAGGGCAGGACA
CTGAAGCTCCAGGGAATCTGTCCTCTTCTCTGGCCTCTGTGAGCATCCAC
ACGCATGGCACACACACACACACACACTCACACACACACTCACACACACA
CACTCACACACTCACACACACACACTCTCTCACACACACACTCACACACA
CAGCGTGTGAGTGGGGGGAGACAGACAGATGCGCAGACCTGCTTCCTTCA
ACCTGGCGTCTGCTTATATCTGCCCTCCAGCAGGGAGCTCTAGACTTTCC
GATTGTGTGCCCAATCTTGTACCCTCTCTGCGGGTACTTTTATTTTTAGA
TTACAGGCATGTAGTAAGTTCTGAGCCAATATAGTATGGATATTGTAAAG
CACTTTTAAAGCAGAAATAAGAACTATTTTCAAAAGTAAACAATATTTGG
AAAATACTTTTATTAACAGTTAAAAAGTCCTAATTTCTCAGCAAAGATTA
TTTTATTGAAAACAATGTAATTCAATATTTTCAGTATTTTTGAAAACCCA
TTGTTTATCACATTATTTTGGACAAAAGAAATCCCAGTCCTAAACACTTC
TA

TTTCTCCCTCTCTTCCNCTCGCCCCCNNNTGNGTGGTGGGGGTGGTCGAG
GGGCGCGGAGGGGTAGGACAGCGAGAGGGAGAGGGATAGGAGAGAGGGGG
AGAGGGGAGCACACCCGCGCGACGGTGTAGAAAAGGGGCAGCACAACGAG
TGGAGAGTATGCCAAGTGTTATAATAACAGAACGTTCCATCGATAGTGTA
GTGTTGGTTCGTGAGGCAGGACCCCGTTATTAGCGCTGGCCTGAGCCAAA
CCTCATAGCGCGTGTGTGGCGTGTCTATGTCGTCCCCTAATGTGTCTCAT
CACCTCCGTGATGTGACGACCTCTTTTAGCCGGTTGACTTTGAATACTGG
ACCCAGTAAGACATACGTAAACGTGGTCTACCGCTGTGGGCCCAATGTGC
GCGCGAAGAGCGCGCCCGCGATATACGCCTGTAGTGCATCTATAATTCCC
GGTTTATCGCACCGGTACTCGAGGAAAAGCGCGCGCATTTGATAAGAGAT
GTCCTCTCCATTCCCCGAGCGCGCATGTGTCAGTCCGCCCACGTACGCCT
TCCCACTTCTGCGTTATTTGTATCATATCATCTATCCCCGCAACTCCGTA
TTAATCGCCTCTTCGCCTTGTCTCCTCTCCGCTCCTTGCGCGGTGTATTT
ATCTGCCCCCTCCTTGCTCGTCGATATACGCTAGCTCGTCCGCGTTTCGC
CCGTTGATAGGATAGCGTATGGAGCGGAGTCAGTAACCAGACGGTGCTGG
ATGGGATAGCCCACACAAACACATTTCTCCACGTCTTGTACAACCACTAG
CGAACAGAAGGTTGTGGAGGCGGACGCGGAGGACCACGTGTATTTTCCCG
CCCACGTGTATGTACCGCGACCAGAAACTATACCCCCTGTATCCGGCGCG
CCCGGTTGCTCTTGCATGCGCCGCACCCAAGCAACCTAGGTTATCCTATC
TCCTTATTATCTCCGCCGCTCTGCGTACCATGCCGATATACGCGCACACC
GAGCTCGCCACCAGCTATGCGTCCGCTAGCTCTGTTTCTTATGTAGTCCC
GCGCCGAGGATATATAGATGGTACGCAACGGATACTATACTCGCAGTCGA
TAAAGACGAGATGATTGACCGCGCTATCCGGAGACATCGTATTAGTGTGG
TGCATATGAGCGAAGCCGATAATACTGTCAGTTGATATTCGCCGCATCCG
CGCGCGCCACTTATCCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_k08.b1 MSMg01no361_k08.b1 CHROMAT_FILE:
MSMg01no361_k08.b1 PHD_FILE: MSMg01no361_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:45 2005
         (582 letters)



>mm_chr6_38474291_38475272
          Length = 982

 Score =  859 bits (444), Expect = 0.0
 Identities = 462/472 (97%), Gaps = 8/472 (1%)
 Strand = Plus / Minus

                                                                       
Query: 111 tggagagagggctgcgctcctgctcttcccacactcactccccacagggcaggacactga 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 tggagagagggctgcgctcctgctcttcccacactcactccccacagggcaggacactga 923

                                                                       
Query: 171 agctccagggaatctgtcctcttctctggcctctgtgagcatccacacgcatggcacaca 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 agctccagggaatctgtcctcttctctggcctctgtgagcatccacacgcatggcacaca 863

                                                                       
Query: 231 cacacacacacactcacacacacactcacacacacacactcacacactcacacacacaca 290
           ||||||||||||||||||||      ||||||| ||||  ||||||||||||||||||||
Sbjct: 862 cacacacacacactcacaca------cacacactcaca--cacacactcacacacacaca 811

                                                                       
Query: 291 ctctctcacacacacactcacacacacagcgtgtgagtggggggagacagacagatgcgc 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 810 ctctctcacacacacactcacacacacagcgtgtgagtggggggagacagacagatgtgc 751

                                                                       
Query: 351 agacctgcttccttcaacctggcgtctgcttatatctgccctccagcagggagctctaga 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 agacctgcttccttcaacctggcgtctgcttatatctgccctccagcagggagctctaga 691

                                                                       
Query: 411 ctttccgattgtgtgcccaatcttgtaccctctctgcgggtacttttatttttagattac 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ctttccgattgtgtgcccaatcttgtaccctctctgcgggtacttttatttttagattac 631

                                                                       
Query: 471 aggcatgtagtaagttctgagccaatatagtatggatattgtaaagcacttttaaagcag 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aggcatgtagtaagttctgagccaatatagtatggatattgtaaagcacttttaaagcag 571

                                                               
Query: 531 aaataagaactattttcaaaagtaaacaatatttggaaaatacttttattaa 582
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aaataagaactattttcaaaagtaaacaatatttggaaaatacttttattaa 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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