Query= MSMg01no362_a19.b1 MSMg01no362_a19.b1 CHROMAT_FILE:
MSMg01no362_a19.b1 PHD_FILE: MSMg01no362_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:16 2005
(560 letters)
>mm_chr6_64413369_64414325
Length = 957
Score = 1029 bits (532), Expect = 0.0
Identities = 549/556 (98%), Gaps = 3/556 (0%)
Strand = Plus / Plus
Query: 5 gaattccaaatgacaccctgatcagcatggaagcttgtcattcagatggctgtatcaggg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaatgacaccctgatcagcatggaagcttgtcattcagatggctgtatcaggg 264
Query: 65 acagaaaagtgtgaaataatattcactttaaatttaataggactaaatttattttgatac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acagaaaagtgtgaaataatattcactttaaatttaataggactaaatttattttgatac 324
Query: 125 aagaagaagctttctagaagaagttttctttattttcaaaactgatagcaatttcaggaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagaagaagctttctagaagaagttttctttattttcaaaactgatagcaatttcaggaa 384
Query: 185 ttggaaatacaagtgagggattgaattacctaaaaagcattcaaatgggtccaatacaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttggaaatacaagtgagggattgaattacctaaaaagcattcaaatgggtccaatacaag 444
Query: 245 tatgcttcacaaactattttagagctggaataatacacaaatggaacaggaaaccaaaca 304
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 tatgcttcacaaactattttagagctggaataatacacaaatggaataggaaaccaaaca 504
Query: 305 gtatgatgttgattctgattatgatggtaaatttccttttcatcttaataagatgtttta 364
|||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct: 505 gtatgatgttgattctgattatgacggtaaatttccttttcatcttaacaaggtgtttta 564
Query: 365 tagttttcagtttcttatgcatgcaatagactaggatagcagttctttggtgcctatggc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagttttcagtttcttatgcatgcaatagactaggatagcagttctttggtgcctatggc 624
Query: 425 ataaatgtataccatgctcataaagaactatcttcaataaagctgagagagtaatgttat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ataaatgtataccatgctcataaagaactatcttcaataaagctgagagagtaatgttat 684
Query: 485 gtaaaacaaccaaagccataagcagaagaacatatgtccttgtgtaccttctttctcagc 544
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 685 gtaaaacaaccaaagccataagcagaa---catatgtccttgtgtaccttctttctcagc 741
Query: 545 aaaagtggatatactg 560
||||||||||||||||
Sbjct: 742 aaaagtggatatactg 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 957
Length adjustment: 10
Effective length of query: 550
Effective length of database: 947
Effective search space: 520850
Effective search space used: 520850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_a19.g1 MSMg01no362_a19.g1 CHROMAT_FILE:
MSMg01no362_a19.g1 PHD_FILE: MSMg01no362_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:16 2005
(436 letters)
>mm_chr6_64586334_64587170
Length = 837
Score = 584 bits (302), Expect = e-171
Identities = 323/330 (97%), Gaps = 1/330 (0%)
Strand = Plus / Minus
Query: 1 cttgccatctgaag-accagggtctatggtagtgggagtctctgatggtctataaatgtc 59
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cttgccatctgaagaaccagggtctatggtagtgggagtctctgatggtctataaatgtc 271
Query: 60 tggcttttcagtagagctcacatatgagatcttgtgctagatgaataccttaggtagagt 119
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 270 tggcttttcagtagagcttacatatgagagcttgtgctagatgaataccttaggtagagt 211
Query: 120 atataagaaatagggagtggttaagtgattcagcgcttgctatacaagtgtgaggacttg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 atataagaaatagggagtggttaagtgattcagcgcttgctatacaagtgtgaggacttg 151
Query: 180 aattagaattctcagaacctatgtaaagctgatagagtaggctctgtctgtaatattaaa 239
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 aattagaattttcagaacctatgtaaagctgatagagtaggctctgtctgtaatattaaa 91
Query: 240 gctccgagagcaaagtgggaggcagagagagagaatacctgcaagcttacatgccatcta 299
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 90 gctcctagagcaaagtgggagtcagagagagagaatacctgcaagcttacatgccatcta 31
Query: 300 gcttggcacatagagtagtaagcaagaaaa 329
|||||||||||| |||||||||||||||||
Sbjct: 30 gcttggcacatacagtagtaagcaagaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 837
Length adjustment: 9
Effective length of query: 427
Effective length of database: 828
Effective search space: 353556
Effective search space used: 353556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
