BAC Information

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BAC

Clone NameMSMg01-362P14
Chromosome6 (Build37)
Map Location 106,841,479 - 106,841,796
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn
Downstream genePpia-ps6_1128.1, Lrrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362P14.T7 (MSMg01no362_p14.b1)MSMg01-362P14.TJ (MSMg01no362_p14.g1)
ACCAG471529AG471530
length805749
length of high quality
(start - end)
322 (48 - 369)458 (81 - 538)
definitionCHROMAT_FILE: MSMg01no362_p14.b1 PHD_FILE: MSMg01no362_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:32 2005CHROMAT_FILE: MSMg01no362_p14.g1 PHD_FILE: MSMg01no362_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGAGAAAGAGAGCAGATGTATGTAGGAGTTGGATGGAGGAAA
GGGAAGAGAGAAAATTACATAATTATATTTTAATTTTAGAAAAAAATTAA
AAAGAATATTCACAAAGGGAACTTGATTCATTATTATGGAGACTTGGAAA
GGCAGCGAATAACCAAGGTTATTAAGTACACACATGAGTAAATAATGAAT
AAATACATAAATAAATGCTATGGGGATGGAGATAATCCTGACTTTACATG
TCAATGGCAAATGCTGAGTTCAGGATGAATAGGGTCTTGTTGTCATGGAA
CATCATGGAATATTCCCTGTAGAAATGGAACGCAGGCGACCCTAATTCTA
ACCCCTGTTCATCCTGACACCATAGTGACCCTGAGCAAGTCTTTTACATT
TTGCTTCTGTGGGACCATTCCTTCTTGTTCAATAACATCTACGCCTCTGT
GTCCACAGGGTTGTTTCCTCTTTTGCACCCCCCGTCGTTTAATACTGCTC
ACACCCCCCAATTCTGTCCCTTTCGCCCGCCCTTTCTTCGTTTTTTTTTC
TCTCCCCACCTCTTCTTCCCCCCCCTTTTCTTCCCAACCATTCTCCCCCT
ACTCTTTCTTCTCAAACTCTCACCCGCAATACATCATTCTATATTTAAAT
TTTATATCCTCTCTTACCATCCCTACTATTTCTTCACCCCACTCCTTATT
CATCCTCTCCGCTATACTTCTACATACATCCTCTTTTTTCTTCACCTCCC
CACTT
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACATCTTCATCTGCAGGCC
TCTAGGAGAAGACTGGCTTCCAGGCAGCTAGGATGAGTGTATTAAAACCC
ATGCCCATCTTGGTACCGGGACTCAGCAGAACTTAGGAAATTAATCTGAA
CAGGTTAGAGGGTGCGCCAGAGAACCGGACAGCTTCTGGGACGGGCAGAA
GCACAGAGCCGCTGAGGCAGCAGCCTGGGCGGGCCGCAGACAACCGGCCA
CCATCCGGACCAGAGGACAGGTGTCCGCCTGGCTTGGGAGGCGACCTCAG
CCTCAGCAGCAGCGGTCGCCATCTTGGTTCCGGGACTCAGCAGAACTTAG
GAAATTAGTCTGAACAGGTTAGAGGGTGCGCCAGAGAACCGGACAGCTTC
TGGGACGGGCAGAAGCACAGAGCCGCTGAGGCAGCAGCCTGTGCGGGCCG
CAGATAACCGGCCACCATCCAGACCAGAGGACAGGTGTCCGCCTGGCTCG
GGAGACGGCCTCGGTCTCCAGAGCAGCGGTCACCATCTTGGTTCCAGGAC
TCCCTGGAACTTACGATTTTACTCTGTCCCGGTGATAGGCTGCCCCACAG
AAGCTGTAGTCTCTTGGTACTTGTCCCTTAACACTTCCTTCTTAATAAAG
GCCTTTTCTGGGCCTCCCCTTTCTTCTTTGAGGGGGTTTCCCCATTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_p14.b1 MSMg01no362_p14.b1 CHROMAT_FILE:
MSMg01no362_p14.b1 PHD_FILE: MSMg01no362_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:32 2005
         (322 letters)



>mm_chr6_106841275_106841996
          Length = 722

 Score =  600 bits (310), Expect = e-176
 Identities = 316/318 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagagaaagagagcagatgtatgtaggagttggatggaggaaagggaagagaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagagaaagagagcagatgtatgtaggagttggatggaggaaagggaagagaga 264

                                                                       
Query: 65  aaattacataattatattttaattttagaaaaaaattaaaaagaatattcacaaagggaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaattacataattatattttaattttagaaaaaaattaaaaagaatattcacaaagggaa 324

                                                                       
Query: 125 cttgattcattattatggagacttggaaaggcagcgaataaccaaggttattaagtacac 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 cttgattcattattatggagacttggaaaagcagcgaataaccaaggttattaagtacac 384

                                                                       
Query: 185 acatgagtaaataatgaataaatacataaataaatgctatggggatggagataatcctga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acatgagtaaataatgaataaatacataaataaatgctatggggatggagataatcctga 444

                                                                       
Query: 245 ctttacatgtcaatggcaaatgctgagttcaggatgaatagggtcttgttgtcatggaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 ctttacatgtcaatggcaaatgctgagttcaggatgaatagggtcttgttgccatggaac 504

                             
Query: 305 atcatggaatattccctg 322
           ||||||||||||||||||
Sbjct: 505 atcatggaatattccctg 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)