BAC Information

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BAC

Clone NameMSMg01-363O09
Chromosome6 (Build37)
Map Location 12,599,109 - 12,599,241
singlet/doubletsinglet
Overlap geneThsd7a
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879
Downstream geneLOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363O09.T7 (MSMg01no363_o09.b1)MSMg01-363O09.TJ (MSMg01no363_o09.g1)
ACCAG472224AG472225
length1,281670
length of high quality
(start - end)
---134 (78 - 211)
definitionCHROMAT_FILE: MSMg01no363_o09.b1 PHD_FILE: MSMg01no363_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:46 2005CHROMAT_FILE: MSMg01no363_o09.g1 PHD_FILE: MSMg01no363_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTACCACTCTAGATATATTACTCCGCGTTACTTCTCCACTCTTCAGAGC
GGCTGGGTGTCGTTGTCGTGTTTTCTACTTGTCCCCCGTATCGGTGTGCA
CCAGTTTTTCCCTCGGAGATTATGGATGCTATAGTGTGTGCGCCTCTCCA
ACATGATACTGTTGGCGTGCCCCTATCTAATATCGATGGTCGCCTTGTGA
CTGCCGCACAGTTATGTCTACACCACTCTCTTAATTTTCTACACCGTATT
ATTCTCCCCACGCACGATCATATGCCAGCGCCGTGTATCGTTAACATGCG
NNCGGGCGGCGTGGCGTAGCTTTAACGCCGTCTTATATCTATTTACAGCC
TCTTAGCAGAATGCGTCATTGGTTTCTTTTTTGTGCGATGGTCCATGCGA
ACGCCTCGAAGCGTCATACGGCTTATGGTTCGCGACTCCTTCGTTCTCAC
TAGTATTCGAACGCTGTCTAGACTTTGTATTCCGTTTCCCTTCGCATCCT
CGACGCGATTATCTTCTTTGCATACTCGCACGCATATTCGGCGGTCATGA
GACGCGATGGTCACATAATTGTATCCAGAGTTTGTGAGTAGCGGTGAGGG
GGACGCTGTGAATACGTTGCTATAATTTTCTACACGCTGCTTTAGGCTTG
TGACGTCATGAGTCCCAACACGCTCACTATACGTCCGATATACCTGTGCC
GCGTGTTGAGTATGAACTTCTGTGGGCATANGTCGAGGACGCAGAAACAT
GACACGATTAACCCGGATCTGACGGATGTGAGTGTATACTATAATACCGG
CCATGCAATACTTCTATGTCACTAACTCTGCGACAGGGGCTGTATAGGTA
ACAGGAAGATTGCGACGCTAGAGCTCGTATGCACAATGCAGGGTGGCTGG
GATGTTGAGTGGCATGTATCTCAGACTGCTCTTTTTCTGATATAGTCTAT
GTAGATGACACGACGCTGCAGATGTAACGTTTTTATCTGCGTACTGCTCA
CACTACGCTCGCTTCGAGTTGCGTCTNAGGGTGTATCTATTAGTTCCTTG
TTGCGTANGGAGCTCGTTATCGTCCCGTACGCGGCTATGTATTCTAGTGT
CACAGCACGATGCAATACACAATGTCGATCAGAAGCCGCGTATATCTCGA
CATATATATGTCGGCAGTGACGAANATCCATATGTACGTACACCTAGCGC
GCCTCTACTAGACCCCCGGACCTGGTATATGATACTTTCGCTACCTGTNG
ATAANGGCTGATATCTATCGTACGCGACCGN
NNTCATGATAGGGTAGCCTGGGGGCGCCTGTTCGAAAACTGAGGTGACCT
ATAGAATGCAAGAGGAATTCAGAAAAATAAAAGAACGTGAATTTAGAAAT
TTGGATTTGAGTCTTGGATTAAACTATGTGTAAGCAAAAGTTCAGCTAGC
CTCAGGGACCAGCACCTATACCTTTATATAAAACAACAATACCAGCATTA
CTCAATACNAAAATCCAGGACAGTTTGTTTTGTATGGGNAAATAAATCTC
TGGGGAAAAAATTTAAAAGGGGGAAAATTAAACCCCCCGGGGGGGAGGAG
CACTTAAAAATCTTTTTTTTTTTTCAAGGGGGGGGGCTGGCGCGAGTTAC
AAGACAGAGGCCGAGGTGGCCGNGCGCCACCATACCCAACACCGTCAATT
TTCTTTTTCTCTTTTATTTTAAACCCCCCCCCCNCCAACAAGAAAAAAGC
GAGCGCCCACCCCGGGGGGGTGTTGCGCCCCCCCCTACTTTTTTTTTTTT
TTCTCTCCGTCGCCCGGCGCTGGGNGCCAAACCCCACCCACAAATTTAAT
AAGTGGGAGTGTTTTGTTTTGTGGTTTTCCCTCCCCCTCCCCCCCCCCGG
GGGTTTTGTGGGTGTGGTAGTAATATGGTANGTAATGTTGTCGGTGGCCT
GTTTGTTCTCCTCACCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_o09.g1 MSMg01no363_o09.g1 CHROMAT_FILE:
MSMg01no363_o09.g1 PHD_FILE: MSMg01no363_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:46 2005
         (134 letters)



>mm_chr6_12598909_12599444
          Length = 536

 Score =  234 bits (121), Expect = 2e-66
 Identities = 130/133 (97%), Gaps = 2/133 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaaag-aacgtgaatttag-aaatttggatttgagtcttggattaaactatgtgtaagc 58
           |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 333 taaaagtaacgtgaatttagaaaatttggatttgagtcttggattaaactatgtgtaagc 274

                                                                       
Query: 59  aaaagttcagctagcctcagggaccagcacctatacctttatataaaacaacaataccag 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 273 aaaagttcagctagcctcagggaccagcacctatacctttatataaaacaacaacaccag 214

                        
Query: 119 cattactcaatac 131
           |||||||||||||
Sbjct: 213 cattactcaatac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 536
Length adjustment: 8
Effective length of query: 126
Effective length of database: 528
Effective search space:    66528
Effective search space used:    66528
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)