NNTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAAGCTCATTGCCGCCTCAAGGACTTCCTAGGACATTGGAAC
ACTGGTTGAGGCTAATCTAACTTAGCTATATGTCAAAATCAATCCTTAAA
GGCACTTATAATAAAACAATACTGAAAGAAAGCACACAGATCCATACACC
AGACTAACTCGGGGACAGGTTTGGAGCATACGGGCTATGGGAATGCCAAG
GTTCCAGGAGGCTAAGTTTCCATGAAACTCTTTGACTCCGGACTGCTTCC
AGGCTTTTAGGACTGTCACACAGACTTCACTGGAGTAGATGTAGCAAACA
CGCAAACAGACACACACACACACACACACACACACACACACACACGCACA
CACACACCACATACACACACACACATACACATACCACATACACACACACA
CACCACACACACATATACACCACACACACACACACACACACCACATACAC
ACACACACACACACACACCACATATACACACACACACACCACACACACAT
ATATATACCACACACATCACTCACATATATTTACCCAATTAACCCCCCCC
CCCTCCCCCCCTTGGGCCCCCCCCCCCCCTTACATTAATCCCCCCCTTAA
GGGGGGGGGGGAAAGGGGGTGTGAAAACTCTTTCATCGTTTTTTTCTTGA
GAGGGGTAGTTTTCGTGTGCCTCCTCTGGGTTGAGAAACTTACGCGCCTC
GGGACTATTCTATTGGATCGGTTTGTGGGGGCTCGCTTTCCCTTGAGTTT
TAAGATTAGAAG

NNTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATATATATTTTGTGAGGAGG
GTGGAAGTTACAATTCAACACACACACTTGGGAACTTTAAAAAAAAATCA
GTATCATTTAGTTTTCTTCTTAGTGGAGCTGTTCCACTTGAAAACAAAAC
AAAACAAAACACCCCCCAAAAACAAAAACAAAAACTAAACACCCAAAAAG
CAAGCAAACAAAAAAACACTGGGACCCTCTGTGTCCACGTTGAAAATATT
TTTACTTTAGTTAATCTCTACTCTGTGTCCTTGAACATAACACCTAACAC
ACTTGGTTCCAATATAAGTGTGCAGTTGACTTTTAAAAACAATACATTGT
GTAGCTAGTACTAGAAAGTCTTAGTATAGGGTCTGTGAAGAAAATTGATA
TGCCGTGCCCTTGCCATGATTTATTCTTCTTAAATATGAGTGGTATGCAT
TATAAGTGGATTCAAATTGTGGGAAAACTCTGCTAATTAAGGTCAAAGTC
CACCATGACTGGATAGCCTCTGGGTTCATAGCCTATGGGAGACTCCCTTC
ATTAATGGGGGTTCTCCTCCCTTGAACTTGGCTTGGAAGCCCCACTTAGG
TCTCACATGAAGTAATTTCCCATATCCCCCATTCAATATATAGGAGACAT
TTCCCTTTCCCCCTATAAAAATCTGGTATGGCCTCCCACTGGAAATCTCT
CTCCTGTTTTATGGAAAATTTTCTCCATACCCC

Query= MSMg01no364_n17.g1 MSMg01no364_n17.g1 CHROMAT_FILE:
MSMg01no364_n17.g1 PHD_FILE: MSMg01no364_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:08 2005
         (462 letters)



>mm_chr6_46674800_46675661
          Length = 862

 Score =  880 bits (455), Expect = 0.0
 Identities = 461/463 (99%), Gaps = 1/463 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatatatattttgtgaggagggtggaagttacaattcaacacacacacttgggaacttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aatatatattttgtgaggagggtggaagttacaattcaacacacacacttgggaacttta 789

                                                                       
Query: 61  aaaaaaaatcagtatcatttagttttcttcttagtggagctgttccacttgaaaacaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 aaaaaaaatcagtatcatttagttttcttcttagtggagctgttccacttgaaaacaaaa 729

                                                                       
Query: 121 caaaacaaaaca-ccccccaaaaacaaaaacaaaaactaaacacccaaaaagcaagcaaa 179
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 728 caaaacaaaacacccccccaaaaacaaaaactaaaactaaacacccaaaaagcaagcaaa 669

                                                                       
Query: 180 caaaaaaacactgggaccctctgtgtccacgttgaaaatatttttactttagttaatctc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 caaaaaaacactgggaccctctgtgtccacgttgaaaatatttttactttagttaatctc 609

                                                                       
Query: 240 tactctgtgtccttgaacataacacctaacacacttggttccaatataagtgtgcagttg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tactctgtgtccttgaacataacacctaacacacttggttccaatataagtgtgcagttg 549

                                                                       
Query: 300 acttttaaaaacaatacattgtgtagctagtactagaaagtcttagtatagggtctgtga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 acttttaaaaacaatacattgtgtagctagtactagaaagtcttagtatagggtctgtga 489

                                                                       
Query: 360 agaaaattgatatgccgtgcccttgccatgatttattcttcttaaatatgagtggtatgc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agaaaattgatatgccgtgcccttgccatgatttattcttcttaaatatgagtggtatgc 429

                                                      
Query: 420 attataagtggattcaaattgtgggaaaactctgctaattaag 462
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 attataagtggattcaaattgtgggaaaactctgctaattaag 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)