BAC Information

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BAC

Clone NameMSMg01-365L09
Chromosome6 (Build37)
Map Location 39,031,088 - 39,031,625
singlet/doubletsinglet
Overlap geneTbxas1
Upstream geneAtp6v0a4, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, 1700025N23Rik
Downstream geneParp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365L09.T7 (MSMg01no365_l09.b1)MSMg01-365L09.TJ (MSMg01no365_l09.g1)
ACCAG473601AG473602
length854728
length of high quality
(start - end)		193 (41 - 233)541 (56 - 596)
definitionCHROMAT_FILE: MSMg01no365_l09.b1 PHD_FILE: MSMg01no365_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:17 2005CHROMAT_FILE: MSMg01no365_l09.g1 PHD_FILE: MSMg01no365_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGCATTGCTTCTGCCTCAGCTTTCTGAGTGCTGGGATTGCAGATGTGACC
CACCACACTTGGCTAGGGAGTGTCTTTATTACAAGTTGACTTTTTTGATT
GTATATTACACACTGTGAGTTGGCCCTTTAGATATTAATGGTAAAGAATG
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCCTCTTTTTTTTTCT
CCTTTTGTTCCCTCTTTCTTTTTTTTTTCTCTTCCCCTCTTCTTTCCTTC
TTTCTTTTTTTTTTTTTTTCCCCCCCTTCTTTTTCTCCCTGTTTTCTTTT
TCCCTTTTTTTTTTTCCTTTCTCGTCTCCATTCTTGTTTTTTCCCTTTCT
TTCACCCCTGTTTCTCCTCCTTTTTTTTTCTACTCATCCCATTAACTTTT
TTTTTCGTCCGCTGTTTCTCTCCTCTATTCCTTTTTTTTTTTTCTTTTCT
CCTCCCCTTCCCACTTTTTATTTTTCTCTTTCTCATTTTCTCCTCTCCCC
ACCCCCCCCTCTCTTTTTTCTTTTCTTTCTTTACCTTTCCATTCTTCTCT
TTACTTTATCTTCACGACCCCCCTCTCACACTCTTTTCACATCAATCCGC
TTTCTTCCTCCCCCACCATTTCACTTCTTTTTTTACTTCTCATTCTCCAT
ATTCCCTTAAAGCCCCTTTCTTTATACCCTTTCCCCTCTCTTCTATCCCT
TTTCCTTCTTTTATGCCCGTTCGTCATCCTTTATCGCTGTGTTTATATAC
CCACGCTTTCTTATATTTCTCCCCCCCTTTTTTTCTCTCCTCATCATCTT
TATA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCATCTAGAGCAGGGGACTGTGAGGGATGTGAGTGTATGGGATAGA
AATGTTGCTATAGAGACAAAAGCCAAGAGACATGGGCATAGCCATCCTCA
AAGAAAGATCACACCAATTCAGATATACGGACAGTGAGGCATCAATTCCA
AAGGGAAAATGGAATGGAGAGATCTAGCGTGACAGCAGTAATGTCCACAA
GGATCAGTATCTTTGGTTTTTCTAAGCCAGAGCACAGGAGGCAGAGTGGT
GGTTGTTGTTTTAGGTTCTTAAGATTTCATTTCTAGTTATATGTGTCATG
TGTGTCTGTATCCAAACATGTGCATGTGAGTGTAGGTATCTATGGAAGCC
GGAAGAACATCAGGTCTCATAGAGCTGCAGCATAGGCAGGTGTGAGCTGC
CCAACACAAGGACTGGAAAACAAACTCCATTCTTCTACAAGAGTGGTACA
CAATCTTAACTACTGAAACTTCTCTCCACCTTGATATATAAATATAAATG
TATGAATATATATATCTTTGGTGCATAAGAAAGCAACAAACCATCACCTC
CATTCAGTGCACTCATACCAGCATAGCTACCCTTTAACTCTAAGCCCATG
AAATCCAAAAGACCTGGATCCTCTTCCTTTCAGGGACATAAATTTGGGCC
ATGGTCAACTGCCCCTCTAGGTTCGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_l09.g1 MSMg01no365_l09.g1 CHROMAT_FILE:
MSMg01no365_l09.g1 PHD_FILE: MSMg01no365_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:17 2005
         (541 letters)



>mm_chr6_39030888_39031825
          Length = 938

 Score =  919 bits (475), Expect = 0.0
 Identities = 524/547 (95%), Gaps = 15/547 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctagagcaggggactgtgagggatgtgagtgtatgggatagaaatgttgctatagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctagagcaggggactgtgagggatgtgagtgtatgggatagaaatgttgctatagag 260

                                                                       
Query: 61  acaaaagccaagagacatgggcatagccatcctcaaagaaagatcacaccaattcagata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaaagccaagagacatgggcatagccatcctcaaagaaagatcacaccaattcagata 320

                                                                       
Query: 121 tacggacagtgaggcatcaattccaaagggaaaatggaatggagagatctagcgtgacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacggacagtgaggcatcaattccaaagggaaaatggaatggagagatctagcgtgacag 380

                                                                       
Query: 181 cagtaatgtccacaaggatcagtatctttggtttttctaagccagagcacaggaggcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtaatgtccacaaggatcagtatctttggtttttctaagccagagcacaggaggcaga 440

                                                                       
Query: 241 gtggtggttgttgttttaggttcttaagatttcatttctagttatatgtgtcatgtgtgt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 gtggtggttgttgttttaggttcttaagatttcatttctagttatatgtgccatgtgtgt 500

                                                                       
Query: 301 ctgtatccaaacatgtgcatgtgagtgtaggtatctatggaagccggaagaacatcaggt 360
           || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 ctatatccaaacatgtgcatgtgagtgtaggtatctatggaagccagaagaacatcaggt 560

                                                                       
Query: 361 ctcatagagctgcagcataggcaggtgtgagctgcccaacacaaggactggaaaacaaac 420
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 561 ctcatagagctgcagcataggcaggtgtgagctgcccaacataaggactggaaaccaaac 620

                                                                       
Query: 421 tccattcttctacaagagtggtacacaatcttaactactgaaacttctctccaccttgat 480
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 tccattcttctacaagagtggtacacaatcttaactactgaaacatctctccaccttgat 680

                                                                       
Query: 481 atataaatataaatgtatgaatatatatatctttggtgcata-a-----gaaagcaacaa 534
           || |||||||||||| ||  ||||||||||     ||  ||| |     |||||||||||
Sbjct: 681 atgtaaatataaatgaat--atatatatat-----gt--atatatatatgaaagcaacaa 731

                  
Query: 535 accatca 541
           |||||||
Sbjct: 732 accatca 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 938
Length adjustment: 10
Effective length of query: 531
Effective length of database: 928
Effective search space:   492768
Effective search space used:   492768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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