BAC Information

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BAC

Clone NameMSMg01-367C21
Chromosome6 (Build37)
Map Location 95,103,993 - 95,104,407
singlet/doubletsinglet
Overlap genenone
Upstream geneMagi1, LOC100043262, LOC665856, Slc25a26, Lrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8
Downstream geneLOC435912, Suclg2, LOC665886, LOC545867, C630007B19Rik, LOC100043685
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367C21.T7 (MSMg01no367_c21.b1)MSMg01-367C21.TJ (MSMg01no367_c21.g1)
ACCAG474714AG474715
length750775
length of high quality
(start - end)
442 (21 - 462)431 (77 - 507)
definitionCHROMAT_FILE: MSMg01no367_c21.b1 PHD_FILE: MSMg01no367_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:15 2005CHROMAT_FILE: MSMg01no367_c21.g1 PHD_FILE: MSMg01no367_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGACTCCTATTTCGAGAGGATCCGCGGAATTCCTGATCATCCTGCATCAG
CCAATAAAGTTATTTAAGTCAAACATAAGCAACACACTATTTGGACAGTT
TCTTTATGTATTTGATCAGTTATGGATTTTACAGGACAACCCGTACACTT
AAGGCTCAGAGAATATCAGAGGAGGCAGAGAGACTGTAAAAGCCAGGGAC
TAAAGAGATGCCTCAGTGGTTAATATATCATTTCTCTTGCAGAGAACCTA
GGACTGAGTCACGCAAACATACGATGTCACAATCATCTGTAACTTCAGTC
CCAGGGGAGCTGATGCCTTATCCTGGTCTCCATAGATGCTGCATGCATGT
GGTACACGTACACAGATGCAGCCAAAATACTTATACCCACAAAATAAATA
AATCTAANAGCAATTTAAAAATAAGATTGTAAGAGCCAGATGACCAGCAC
ATCTGCTATCAGAAGGTGTCTTTTATACATGGCAGGAAGCTGTACTCATG
AAATCTNCATAACACAGTCATCTGAGTAATGGCAACATCAACTGATATCC
CAAAATGTGGGGGAAAACTCCCTTAAACCAAAGCTAAGGGAATTACTATT
TTTAGGGGACCCCGCCTCCTTAGGAAGGGGGGGAGGCCCGGAAAATATAC
CACCCCCTTTTCTGCCCCAAATGGGCCTATTTGGAAATGGCACTGGGCCC
CCAAATTTTTTTTTATGTTCAATCTATTTAAGGGGGGGTTGCGTCTTGTG

NCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAAGCATCTGTGCTCCTAGGAAA
GACACCAAGTTCAGGGTTAATGTAAGCAGCCAGAAAACTTATTTTCTCTC
CTACTTTCATTCCACTCTGCTTTCTTCAGTGGATCCCCAAGGTGGTGTCC
TCATGGTCTACGTGCATGCATCATTCAAAAGACTTCTATAGTTACCTTCA
AGCTTCTGAAGAAAATGCAGATACATCTACCTAGACATAAAGTTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCATACATGCATGTTTTCTTGAGTGTACATGTATGTATGAA
TGCATGTGTACATGCATGCATATGTGTAGAGGCCAGAGGTCAACCTCCAG
TGTTGTCCCATCTACCTTGAAGATGCTTGCTTGTTTGTTTCTTTGTTTGC
TTGCTTGCTTGCTTTTGAGACAGATTTTCTGACCTGGAGCTGTGCCGATG
GCTTAACCCGGTGACCAGTGAAACAACCCCCAGAAACCGGCCTGGGTCTT
CCTCCGGAGGTGGGAAAAAAGTGTGCACCCACCCCGGGATTTTTTTTTTT
TAGGGGGGACCCGGGGGTGTGAACTATAGTCCTTTTTTCTAACACCACGT
GTTTCTTTAGGTTTTTTTCCCTCCCCAAAGGGTATACTTTGAAAATTTTT
TTATTTCTTTCGCAGAACCGTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_c21.g1 MSMg01no367_c21.g1 CHROMAT_FILE:
MSMg01no367_c21.g1 PHD_FILE: MSMg01no367_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:15 2005
         (431 letters)



>mm_chr6_95103991_95104821
          Length = 831

 Score =  721 bits (373), Expect = 0.0
 Identities = 410/431 (95%), Gaps = 16/431 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaagcatctgtgctcctaggaaagacaccaagttcagggttaatgtaagcagccagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ttaagcatctgtgctcctaggaaagacaccaagttcagggttaatgtaagcagccagaaa 358

                                                                       
Query: 61  acttattttctctcctactttcattccactctgctttcttcagtggatccccaaggtggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 acttattttctctcctactttcattccactctgctttcttcagtggatccccaaggtggt 298

                                                                       
Query: 121 gtcctcatggtctacgtgcatgcatcattcaaaagacttctatagttaccttcaagcttc 180
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gtcctcatggtatatgtgcatgcatcattcaaaagacttctatagttaccttcaagcttc 238

                                                                       
Query: 181 tgaagaaaatgcagatacatctacctagacataaagttctctctctctctctctctctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tgaagaaaatgcagatacatctacctagacataaagttctctctctctctctctctctct 178

                                                                       
Query: 241 ctctctctctctctctctctctctctctctctctctctctctctcatacatgcatgtttt 300
           |||||||||||||||||||||||| |             |||||||  ||||||||||||
Sbjct: 177 ctctctctctctctctctctctct-t-------------tctctca--catgcatgtttt 134

                                                                       
Query: 301 cttgagtgtacatgtatgtatgaatgcatgtgtacatgcatgcatatgtgtagaggccag 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 133 cttgagtgtacatgtatgtatgaatgcatgtgtacatgcatgcatatgtgcagaggccag 74

                                                                       
Query: 361 aggtcaacctccagtgttgtcccatctaccttgaagatgcttgcttgtttgtttctttgt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 73  aggtcaacctccagtgttgtcccatctaccttgaagatgcttgcttgtttgtttgtttgc 14

                      
Query: 421 ttgcttgcttg 431
           |||||||||||
Sbjct: 13  ttgcttgcttg 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)