BAC Information

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BAC

Clone NameMSMg01-368P15
Chromosome6 (Build37)
Map Location 134,529,215 - 134,529,672
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660, Bcl2l14, Lrp6
Downstream geneMansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368P15.T7 (MSMg01no368_p15.b1)MSMg01-368P15.TJ (MSMg01no368_p15.g1)
ACCAG476075AG476076
length1,341720
length of high quality
(start - end)
---544 (69 - 612)
definitionCHROMAT_FILE: MSMg01no368_p15.b1 PHD_FILE: MSMg01no368_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:34 2005CHROMAT_FILE: MSMg01no368_p15.g1 PHD_FILE: MSMg01no368_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAATTGTCAATATATGTGCGGGGTCATGTTAATTATCAATTTCCTCTTC
TCTTCTCCTCCTCATAATATCACCTTGTTTCTCTTATCGTTNCGTTTTGC
TCGCATNTCTNCCTTNCAGCTCTCTTCTACTTCACGCTACGTTCTCTACC
CAACCTCTTCCTAACATTACACAAATTATAACACCTATTTAGCCACCCTC
TCCCCTCCTTATCTACTTGCTCTATTCTTCACCACGTACACAGCAAGATT
AAATCATAATTACTTTCTAAACGTTGTATGGGAAGTTGAATGGGTGTAAG
GGGGTGGTAGCGTGAAGCGATGGCAAATACTTCTGAAACCCTTCCTTCTT
TTTCCTCTATTATCCTCATGCAAAACTCTATATCTCATTACCTCCTATCA
CCTACCGTCACTCTAGTACGCTCCAGCCTCTGACTCCCACATTTTACATG
TCTGCACGCTCTCCCGTACTCATTCACGACCCTTCTCACCCCAGACTCTA
CCAATATATACCTCTCAGAAGCATGTCTCTCTACTCTCCCTCTAGGTGAC
CCCCTCCTACACACACGTATGCTCACATCCACAAATCACATTTCATCCAC
TCAACAAACTAGAATCACCTAGTGTCCTCTCTTCCCCCTCCCTCTTACCC
CACTCCCCCTCAATCATCCCAAACCGACCCACACCTACTATCTCGACCCC
ACCCACCCGCCACCCGTACTAAATCTTCTAAATCCGCCCCTCTCGCACGT
TACTTTCTACCTAATATCATTACCCTGCATTATCTCTCCACTCTCATATC
ACGCTCCTATCCACATTTACCCTATCTTCTACAGCGTCCCTACACTGCTA
CACGCTACTTACTATGTATCAACTATCTATCTCCATCTCACTCCTATTGG
ATTTATTATCTCAAGCCTCCACTATCATCCATACTCACTCCTCTCCGACC
TCATCATTAACTACCTAACCATACAACACATATATCAACTAATCACACAT
ACTACTACTCCTAGACACACGCACACTCCTCCTAAACATAATTATCATCG
TCACACCCCACCACCACTCACACTACCAGCACACCTCCTCCCGCTACTAC
CCACCTCATATGTTACACCACCACACCTCGCCATCACCTATCTCTACCAT
CCCCCCCCTAATACTCGCTAAACCATATCACCATTCCACCCACGATCATT
ATCTAATCAAANCACAACACTCGCCTATATGATATTATATCGCATCCTAT
CTACATAACCCTCTTCACTCGCCGATATGACATAACTTATAGTATACTAT
AATCTAGATAATCTACACTATCCGTACGACCCTCTATTATN
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTTGCATTGTTAAAAGAAAATGTGTGCTAGT
TGTCTCCTAAGAATTAAGGCGCTGGGGTCACCGGATGCTGACTCATAGGT
CAATCAAAAGGGAACCTGGAGTAAATGACTGGACTGATAGGTAAAATAAA
AGACTGGGCTTAAGATTTGCAAGAGATGAGCTAGCCAGAGAACTTTTTAG
AATAAAAAGAGAGAACTGCTTGGAGAGCCATCAGAAACTAGAGAGAAAGC
TCTTACACACCCTTTCCTCTTAACCCATCTCCAAGCCAAGGCTGGTCCTT
GGCAGGGTGGTAGTGTTGGAATCTCGGACGAGAGTCTAAACACCCTTTGC
ATCCCCTCCCCCCCTGAGGAAAGGACTGATATGGAGGATCTCCTGCGACT
GGCCACGGCCCTCTTGATAAAGACAGTGGCTCCCAGGTTTAGAGGGCAGC
ACATGACAATGCTTATAAAGCTGGGTTTCAGGCTCCAGTCTTCCTTTTAA
ACTCAAGCCTGCCATTTTCTCCTTTGGATGAAGCTTACGAGAAGTACTGG
TACAGATTAGTAAGAGCCTATATTCCAGAGTGTTTGTGAGACCTCAGAGA
AATCACCACGCCCTTGATCCTACACTGCCCTCGAATGTAACGTGGAAATG
TTCACATTAGTGCATACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_p15.g1 MSMg01no368_p15.g1 CHROMAT_FILE:
MSMg01no368_p15.g1 PHD_FILE: MSMg01no368_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:34 2005
         (544 letters)



>mm_chr6_134528729_134529672
          Length = 944

 Score =  847 bits (438), Expect = 0.0
 Identities = 453/458 (98%)
 Strand = Plus / Minus

                                                                       
Query: 87  caaaagggaacctggagtaaatgactggactgataggtaaaataaaagactgggcttaag 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 caaaagggaacctggagtaaatgactggactgataggtaaaataaaagactgggcttaag 885

                                                                       
Query: 147 atttgcaagagatgagctagccagagaactttttagaataaaaagagagaactgcttgga 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 atttgcaagagatgagctagccagagaactttttagaataaaaagagagaactgcttgga 825

                                                                       
Query: 207 gagccatcagaaactagagagaaagctcttacacaccctttcctcttaacccatctccaa 266
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 824 gagccatcagaaactagagagaaagctcttacacaccctttcctcagaacccatctccaa 765

                                                                       
Query: 267 gccaaggctggtccttggcagggtggtagtgttggaatctcggacgagagtctaaacacc 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gccaaggctggtccttggcagggtggtagtgttggaatctcggacgagagtctaaacacc 705

                                                                       
Query: 327 ctttgcatcccctccccccctgaggaaaggactgatatggaggatctcctgcgactggcc 386
           |||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ctttgcatcccctccttctctgaggaaaggactgatatggaggatctcctgcgactggcc 645

                                                                       
Query: 387 acggccctcttgataaagacagtggctcccaggtttagagggcagcacatgacaatgctt 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 acggccctcttgataaagacagtggctcccaggtttagagggcagcacatgacaatgctt 585

                                                                       
Query: 447 ataaagctgggtttcaggctccagtcttccttttaaactcaagcctgccattttctcctt 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ataaagctgggtttcaggctccagtcttccttttaaactcaagcctgccattttctcctt 525

                                                 
Query: 507 tggatgaagcttacgagaagtactggtacagattagta 544
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tggatgaagcttacgagaagtactggtacagattagta 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)