BAC Information

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BAC

Clone NameMSMg01-369L04
Chromosome6 (Build37)
Map Location 81,989,470 - 81,989,649
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042991, LOC232143, 1700009C05Rik, AW146020, Mrpl19
Downstream geneTmem166, EG622198, Tacr1, Pole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369L04.T7 (MSMg01no369_l04.b1)MSMg01-369L04.TJ (MSMg01no369_l04.g1)
ACCAG476621AG476622
length874825
length of high quality
(start - end)
155 (64 - 218)193 (74 - 266)
definitionCHROMAT_FILE: MSMg01no369_l04.b1 PHD_FILE: MSMg01no369_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:29 2005CHROMAT_FILE: MSMg01no369_l04.g1 PHD_FILE: MSMg01no369_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGAATTCTTTGT
TCTTCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGGAGTCCA
TCTTCTTGAGTTCTTTATATATATATTGGATATTAGTCCCCTATCTGATT
TAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTA
TTGACGGTGTCTATTGCCTTACCACAGTTTTGCAGTTTCATGATGTCTTA
TTTGTTAATTCTCGATCTTACTGTACTGGTCATTGCTGTTCTATTCATTA
CTATTTCCCCTGTTTTTTTCTCTTCGAGGCTTTTCCCCACTTTCTCCTCT
ATTTTTCTCCTTCGTCTTCTGGCTTTAGGTGGAGTTTTTTTACTTCTCTA
ATACTTTGACTCCTCCTCCCCCTTGTTTACACCTTCTGCTTTCCTTTTTC
TTCTTCTTTTACTGATCACTTCCTTACCTTTGTGTCTATTTTCTTAACCG
TCTTATTTCTTGCTATCCTTTCTTTTCTCACCGCCTCCGGTCTTCTTCCT
TCCTCTTCGCTTTTTCTTTCCCCCCTTTCTCTTACCTCCTTACTCCTTTA
TTCTTTCTCTTTTATCCCCATTTCTCTCTATTTTTTTTTTTTCTCTCCCT
CCTCCCTCCTTTTTTTTTCTCCCTCTTTTCTCCCCCCCCTATTTCCCCTT
TTTTTTCTTTTTTTTTCTTCCATCCCTTTTTTTTATTTTCTTCTTCCCTT
CTTACAATTTCTTCTTCTTTAACTCCCTCCTTTTCCTCCTTCCCCCCTCT
TTCTTCTCTTTCGTCTCATCCTCCTTTCTTCTGTATATTTTTTTCTCACA
TTTATAATTTTCCTCTTATTTCTT
ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCCAGAAATTCCATGGAAAGATCTAAATAACCATAT
CTCTTTTGCTAACTGGAGAAACTCCAGGGCTCTAGATCTTTCTCCATCTA
TTTGACTGGGCTGTTGTCAGAGCAGGTGATGCCCGTTCTGCTCGCTGGAA
TCCAGGGAGCCCTGTGAATGGTGCAGGGAGGCCCCGTGTAGGGGCATCCT
CTGTTTGTATCAGTGAGGCCGCACATCAAGAATCAGAACTATGTAGATAG
TAGCTTTCTTCCCCAACGCTGTTTTTTTTGCAGTTCAGTGTTGTCTGCTT
CATTATCACGGATTTAGGCTACTTTTTTATTGGATGAAGTTTGTTCTTAT
AATTTTGCATTATATTACCATCCCTTATCAGCTTTATTAAACTTTTTTCT
ACGTCCAATTGGTTTCCCAGTATTTCTTATGTTCTTTTCTTTCTTCCTCA
TGCTACTTTTTGTATTATCTCCTTGTTCTTGTTTCCTTCAGTTTCCTCCT
TATTCTCCGTCTTATTTTCCCTTTGTTTTTTCCCATACCGTCCTTGTTTC
TTCTTTTTTATAATGTATACCTGTCCTTTCTCTTCCTTTCTCTCATTTCT
TCTTCTCCTCACTCCCTATTTCTCCTCCTCACCTTTTTCTTCATCTCTTC
TCTTTTTTTTCTTTTATTCCATTTTTTCCTTCCTCTTTTTTTCCCCCTCT
CTTTTCCTTACTTTATCTCTATCCTCTTTTTCTCTCTCCCCGCCTCTTTT
CTTTCCACCTACTCTTTCTATCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_l04.g1 MSMg01no369_l04.g1 CHROMAT_FILE:
MSMg01no369_l04.g1 PHD_FILE: MSMg01no369_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:30 2005
         (193 letters)



>mm_chr6_81989269_81989861
          Length = 593

 Score =  317 bits (164), Expect = 2e-91
 Identities = 176/180 (97%)
 Strand = Plus / Plus

                                                                       
Query: 2   ccatggaaagatctaaataaccatatctcttttgctaactggagaaactccagggctcta 61
           ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 202 ccatggaaagatctaaacaaccatatctcctttgctagctggagaaactccagggctcta 261

                                                                       
Query: 62  gatctttctccatctatttgactgggctgttgtcagagcaggtgatgcccgttctgctcg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gatctttctccatctatttgactgggctgttgtcagagcaggtgatgcccgttctgctcg 321

                                                                       
Query: 122 ctggaatccagggagccctgtgaatggtgcagggaggccccgtgtaggggcatcctctgt 181
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 322 ctggaatccagggagccctgtgaatggtgcagggaggccccgtgtaggggcatcttctgt 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)