Query= MSMg01no370_f14.b1 MSMg01no370_f14.b1 CHROMAT_FILE:
MSMg01no370_f14.b1 PHD_FILE: MSMg01no370_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:22 2005
(404 letters)
>mm_chr6_36915034_36915835
Length = 802
Score = 708 bits (366), Expect = 0.0
Identities = 388/396 (97%), Gaps = 2/396 (0%)
Strand = Plus / Plus
Query: 5 gaattctgggcaaatgtcaatgtgtggccaggaaataaacacttgggaaaggatggatca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgggcaaatgtcaatgtgtggccaggaaataaacacttgggaaaggatggatca 264
Query: 65 cgtctcatagcagacaagctggagtcatttaacttcctgacaggtttcaaattgaaatgc 124
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cggctcatagcagacaagctggagtcatttaacttcctgacaggtttcaaattgaaatgc 324
Query: 125 ctccctccatcaaatgagtgctaatctctactgaacagccctgttgtcaacttggtaaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctccctccatcaaatgagtgctaatctctactgaacagccctgttgtcaacttggtaaat 384
Query: 185 gagggggaaattaaattctagataaagcagttgatagaaagaatcatatcttttggaaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagggggaaattaaattctagataaagcagttgatagaaagaatcatatcttttggaaaa 444
Query: 245 agattattatttatctgatgcttgatagaaaaacgggtactcagtgtttccatagcttat 304
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 445 agatcattatttatctgatgcttgatagaaaaacgggtacttagtgtttccatagcttac 504
Query: 305 gcagtccttaaaacagaataaaaaagcaattcccagaacatctctatttttttttgtttc 364
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 505 ccagtccttaaaacagaataaaaaagcaattcccagaatatctctattttttt--gtttc 562
Query: 365 atttttcaaacaacatttgcttacagtaagaactca 400
||||||||||||||||||||||||||||||||||||
Sbjct: 563 atttttcaaacaacatttgcttacagtaagaactca 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 802
Length adjustment: 9
Effective length of query: 395
Effective length of database: 793
Effective search space: 313235
Effective search space used: 313235
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no370_f14.g1 MSMg01no370_f14.g1 CHROMAT_FILE:
MSMg01no370_f14.g1 PHD_FILE: MSMg01no370_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:23 2005
(249 letters)
>mm_chr6_37130123_37130771
Length = 649
Score = 439 bits (227), Expect = e-128
Identities = 246/257 (95%), Gaps = 8/257 (3%)
Strand = Plus / Minus
Query: 1 cctgtcagggaccctgagagagaacagggcatgg--------tgtttgtttgtttgataa 52
|||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 491 cctgtcagggaccctgagagagaacagggcatggtgtttgtttgtttgtttgtttgataa 432
Query: 53 caccttctgcacaggattaggttgtgcgccttgcaattttaatcatatgcatattgaggc 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caccttctgcacaggattaggttgtgcgccttgcaattttaatcatatgcatattgaggc 372
Query: 113 acagctagtgataaggcggttaagcagaggtattttcctctgttcgctgtgagagcacag 172
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 371 acagctagtgataaggcggttaagcagaggtattttcctctgtttgctgtgagagcacag 312
Query: 173 gttgttttaccgtgtgcccctgcctcccctccacttacagatgtgttctgggatgtgtct 232
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 311 gttgttttactgtgtgcccctgcctcccctccacttacagatgtgttctgggatgtgtgt 252
Query: 233 gaccgcaaccatcagat 249
|||||||||||||||||
Sbjct: 251 gaccgcaaccatcagat 235
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
