BAC Information

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BAC

Clone NameMSMg01-370P13
Chromosome6 (Build37)
Map Location 113,210,587 - 113,211,048
singlet/doubletsinglet
Overlap geneMtmr14
Upstream geneLmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4
Downstream geneCpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370P13.T7 (MSMg01no370_p13.b1)MSMg01-370P13.TJ (MSMg01no370_p13.g1)
ACCAG477591AG477592
length7821,437
length of high quality
(start - end)
465 (37 - 501)---
definitionCHROMAT_FILE: MSMg01no370_p13.b1 PHD_FILE: MSMg01no370_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:11 2005CHROMAT_FILE: MSMg01no370_p13.g1 PHD_FILE: MSMg01no370_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCA
AGGATTATAAAGATCGGGATTACATGGCTGAAGGGCTCATATTTAACTGG
AAGCAGGTATGAGTAACAGTAACCAACTATGTTTCTTTGTAACAGGAGAC
CACAGAGAGCTAGTGTCTCCCTGGGAGGATGCTGCTCTTTCTTTGTTATT
GCCTGCACTAGTCTATGTCTTCCTCTGCTGCTGGCATGGTGCAAGTGTCT
CGCAGCACACCCTTTCCTCTCCCCAGTTTTCATGGCTGCCTGGAAGCAGC
GCTGTTTCTTCAGGTCATTAACAGGGAGCCTCCAGTGGCTTGCTCTTGCT
TCTTGCAGCCTCAAATACTTGAGCTTCTGACAGATAAACTTCCTTCAGCC
ATAATGACCTAGTCACTTTGCTTTACTTTTTTTTTTTTTTTTAATTAGAT
ATTTTCTTCTTTTACATTTCAAATGCTATCCCGGAAGTCCCCCTCCCCCT
CACTTTGCTTTTTAAGCTATTCCAGAGTACCCCAAGCATCTGATCCATAA
TGTAAGCGCTTGTGGAGGGTCGTTCCAGTTCCCCAGCTTGAACCTGTTGG
TGCCCAATCAAATCTTGTCCTTTCCTTACCCTTCAATGGCGTTCTGTCCC
TTATACAACCTCCAACCTTTTTTTAACTTCTCACCATTCCTAATAATTCC
CTTAACATTACCTGGATCCCCCTCCATTGTGAGGTCCTATTTCCCTCTTT
CTCCCTAATCCCCTATTCTCCTCCCCCCTCCN
TATATTTATATGCTTGATGTGCGACGTACCCAGGAGCGTGTCTAGAAAAG
CTCTACGCGAGGAGGAGATAGTATAGGGAAGGAGTGCCAGGCGCGAGAGT
GAGCTGTGCTGGATAGGTGAGCAGTAGTATAACTCTTGTAGACTAGAGTA
GTTATAGTACAAGACGTGCCACCGTATGCGTACATGTCTATCGCGCAGAG
AAGATAGTANCTTACTTGATATAGATGTAGTCAGCTAGCTAGTATAGATA
TCTGCGAGGCGATCGCGTTAGTATGGCCACGGACGGGACGAATAATAGAG
CGGCGCTGTTGGTGTCGAATGGCCGCCAGCATTACGTCTATCTATATACC
GCCGTGATGACTATGCTTAGTACACTAACACACTAATATAGGAGCAATAT
TATACAGATGATATAGCACGCATCATGATCTCGAGTGAGATAGTTATACA
CTCAAGTATATAACTCGTACAGTTCGCAAATAGGCGCAACCGTTGTGCAT
GTTCATACACTAATAATGTCGACGCAAAGATGTCGTAACCATGTATGCGA
TTAAGTGATATATATATACAGAATGTATTTATTGGTCTCACATCAAATAT
TATCTTATAGCGGCGAGTGAAAGTATATATCTGTGCTAGTGATTCTGCGG
TATGTACGTCTGTNATAGTTCATCGAGTCGAACAATACGGATAGATTTTA
AGCGCGGATGATACTAGATACGCACGCGTATTGATCGCGCTGCGTGATGT
CTTCCGAGTCGNCATACGCGTACTATCTTCATATCACGCCATCGTATCAC
ATATTCACGTAGATCTGTTTTGGTGNTCGCACTGCCAGTACCAGTACCTT
CTACGATCGACCTCCNCGTGTTGTCGTATACGTTTTATTCTCCGCATAAT
CGATCATATNCCGACACGCGATGCTCTCTCTCGTCTACGTTCGCCATTAT
TGGTGTAGCCAATTACTATCGTGCGCGTCGCGGTATTGTGTTATNTTGTC
GACGCCGCACCCGCTGCGCGTGTGCCGAGCGCGTATTGAATCTAATGTTC
TAGCGAAGTGACACGGTGCCGACGATCTTCGTAATTATTATATTCGTATC
ATATATTTCGGCGCGCATTAGGCTCGCACGCTACGACACTCTTATTGGTC
GATATTAATAGATATGTGTATACAATACACTTGACGTTCGCAGAGCATAC
GATATTGAGCGCTAGTATGGCAGACGCGTCGGCGACNCGTAGTGATATCA
GGTCGCGAATAGCTCGAAGNGACCTATGACGTNATTTCGACGCGCGCGCT
GTCTTTATCTGGTTCGCTGAACTGCGCTGAGCGTCGCGTTACGTCAGATA
CTAATGAGGATGACATCGACGTAGACGTAATAANAAGTAGACAGAGACTA
TGTTCAGAACACATGATTGATCACTACATATTGCCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_p13.b1 MSMg01no370_p13.b1 CHROMAT_FILE:
MSMg01no370_p13.b1 PHD_FILE: MSMg01no370_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:11 2005
         (465 letters)



>mm_chr6_113210383_113211247
          Length = 865

 Score =  862 bits (446), Expect = 0.0
 Identities = 458/462 (99%), Gaps = 1/462 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcaaggattataaagatcgggattacatggctgaagggctcatatttaactgg 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcaaggaatataaagatcgggattacatggctgaagggctcatatttaactgg 264

                                                                       
Query: 65  aagcaggtatgagtaacagtaaccaactatgtttctttgtaacaggagaccacagagagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagcaggtatgagtaacagtaaccaactatgtttctttgtaacaggagaccacagagagc 324

                                                                       
Query: 125 tagtgtctccctgggaggatgctgctctttctttgttattgcctgcactagtctatgtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagtgtctccctgggaggatgctgctctttctttgttattgcctgcactagtctatgtct 384

                                                                       
Query: 185 tcctctgctgctggcatggtgcaagtgtctcgcagcacaccctttcctctccccagtttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcctctgctgctggcatggtgcaagtgtctcgcagcacaccctttcctctccccagtttt 444

                                                                       
Query: 245 catggctgcctggaagcagcgctgtttcttcaggtcattaacagggagcctccagtggct 304
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 445 catggctgcctggaagcagcgctgtttcttcaggtcatgaacagggagcctccagtggct 504

                                                                       
Query: 305 tgctcttgcttcttgcagcctcaaatacttgagcttctgacagataaacttccttcagcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgctcttgcttcttgcagcctcaaatacttgagcttctgacagataaacttccttcagcc 564

                                                                       
Query: 365 ataatgacctagtcactttgctttactttttttttttttttt-aattagatattttcttc 423
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 565 ataatgacctagtcactttgctttactttttttttttttttttaattagatattttcttc 624

                                                     
Query: 424 ttttacatttcaaatgctatcccggaagtccccctccccctc 465
           ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 625 ttttacatttcaaatgctatcccggaagttcccctccccctc 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)