BAC Information

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BAC

Clone NameMSMg01-371N21
Chromosome6 (Build37)
Map Location 111,231,240 - 111,358,886
singlet/doubletdoublet
Overlap geneGrm7
Upstream genenone
Downstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371N21.T7 (MSMg01no371_n21.b1)MSMg01-371N21.TJ (MSMg01no371_n21.g1)
ACCAG478268AG478269
length779804
length of high quality
(start - end)		398 (83 - 480)414 (49 - 462)
definitionCHROMAT_FILE: MSMg01no371_n21.b1 PHD_FILE: MSMg01no371_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:28 2005CHROMAT_FILE: MSMg01no371_n21.g1 PHD_FILE: MSMg01no371_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,231,240 - 111,231,637)(111,358,477 - 111,358,886)
sequence
NAAAANNNCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTAGACTATGATTTTT
CTTTCTTGTTTTTGTTTTATTAAGTTGCTGGATTAATGGATTCATTATGT
AGTGGTTGGCCATAAGTGATTGTCTTTTTTATAGTTGGGTGTTTGTTATT
TGTGCTTTTGTTATCATCAGTTTTAACAGAAGATCATCATTATTACTTTG
AAAAACCATATTTTTCATTCGTTTCTACTCATGATACTTTGTATATCCTT
CCTCTTGCTTTGGGTTAATTATTGCCTTCTTTCTTCCTGGTTTCTTTAAC
TTTAAACCTGGGTAATTCTTTGGAAATCTTTCCCCGTATTTTTAAAAGAT
GTGTGTATTTTATTTTCTTTATTTGGATGTATTGCCTTGATGCATGCACG
TGTGACACATGAGTACAGTGCATGCCGAGCTCAGAAGAGGGGATCAGATC
TCCTAGAACTGGAGTTACAGATGAATCCTGATCAACCCTCTTGACGGCTA
AGGAACATGCCCACGTCCCTCTGTCGGAGGGACGCGGTAATCTTCACCTA
TTGGAAATTCTCCTCAGCCGGGGACTCTTTTGGTCCAAAGGAAAAGTGCC
CTGGCTAAATTTTCTCTTGTATCCCACAATTATTTGCGTCCCTCAATCGT
GGAAAAATTTTTTCTTCATTTCCCGTTCTCTTCTCTTTTGGGCCACTATT
CTTCATTGCCTTACCTTTTCACCCACCCA

NNNTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCCAGTGGGCGAAAGTAGGCGTTTTCTGCTAGCAGTTTATC
AAGAGAGATGGACATCCAGTAGCTTCATAGCATCATTGCCTGAAGCAGCT
GATAGCATCACAAGGCCACTGTAATTGGCACTTTTCACATAGTATTTTCC
TGACTATGAGTTGACAGCTCTCAAGAAAGAGGTGGCTCAACATGTAAGGG
ATTCTAACTCAGAGAACTGACATTTAAGGCTGAGCAAGGGATTGAGTATC
TGTAATCCCGACAACTAACAGGCAAAGGGAGAATAATCCCTGAAAGTCTG
AGGCGAGCTTGATCAACATACCAATTTAATCAGAGCTATTCAGTAAAATT
CCGTCCCATAAATTAAATTAGGCAGCTAGAGAGACAGTAAACTGTTCATA
AGTAGCTGTAAAAGAAGAAGTATGAGGACATGGGTTCGAATCCCCATTTT
TTAAAAACAAAACAACAACAGCAACAACTAAAACCCCAGGAATGTATAAG
TAACTGCCACTCTAGGTTAAAAATAAGGAAGGTCGAGGCCTATATATATA
TATATATTCCCCGGACCTTGTTGGGTAAACAAGCCTAAAAAAATAAGCCA
GCCCCCGTTTTCCAAAATCCACCTTGGTGGGAAACCCCCCCCACCCCCAC
CCTAACCCTCCCCTCCCCAAAAACCTTTTTATAATTTTACCTTAAAAAAA
ATTGGGGGTTGAAATATTATATTTAAACCCCCCCCGGGGGGGCGCCCCCC
CTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_n21.b1 MSMg01no371_n21.b1 CHROMAT_FILE:
MSMg01no371_n21.b1 PHD_FILE: MSMg01no371_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:28 2005
         (398 letters)



>mm_chr6_111231040_111231837
          Length = 798

 Score =  770 bits (398), Expect = 0.0
 Identities = 398/398 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtagactatgatttttctttcttgtttttgttttattaagttgctggattaatggatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtagactatgatttttctttcttgtttttgttttattaagttgctggattaatggatt 260

                                                                       
Query: 61  cattatgtagtggttggccataagtgattgtcttttttatagttgggtgtttgttatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattatgtagtggttggccataagtgattgtcttttttatagttgggtgtttgttatttg 320

                                                                       
Query: 121 tgcttttgttatcatcagttttaacagaagatcatcattattactttgaaaaaccatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcttttgttatcatcagttttaacagaagatcatcattattactttgaaaaaccatatt 380

                                                                       
Query: 181 tttcattcgtttctactcatgatactttgtatatccttcctcttgctttgggttaattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcattcgtttctactcatgatactttgtatatccttcctcttgctttgggttaattat 440

                                                                       
Query: 241 tgccttctttcttcctggtttctttaactttaaacctgggtaattctttggaaatctttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgccttctttcttcctggtttctttaactttaaacctgggtaattctttggaaatctttc 500

                                                                       
Query: 301 cccgtatttttaaaagatgtgtgtattttattttctttatttggatgtattgccttgatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccgtatttttaaaagatgtgtgtattttattttctttatttggatgtattgccttgatg 560

                                                 
Query: 361 catgcacgtgtgacacatgagtacagtgcatgccgagc 398
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgcacgtgtgacacatgagtacagtgcatgccgagc 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no371_n21.g1 MSMg01no371_n21.g1 CHROMAT_FILE:
MSMg01no371_n21.g1 PHD_FILE: MSMg01no371_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:28 2005
         (414 letters)



>mm_chr6_111358436_111359249
          Length = 814

 Score =  793 bits (410), Expect = 0.0
 Identities = 410/410 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcccagtgggcgaaagtaggcgttttctgctagcagtttatcaagagagatgga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gaattctcccagtgggcgaaagtaggcgttttctgctagcagtttatcaagagagatgga 392

                                                                       
Query: 65  catccagtagcttcatagcatcattgcctgaagcagctgatagcatcacaaggccactgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 catccagtagcttcatagcatcattgcctgaagcagctgatagcatcacaaggccactgt 332

                                                                       
Query: 125 aattggcacttttcacatagtattttcctgactatgagttgacagctctcaagaaagagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aattggcacttttcacatagtattttcctgactatgagttgacagctctcaagaaagagg 272

                                                                       
Query: 185 tggctcaacatgtaagggattctaactcagagaactgacatttaaggctgagcaagggat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tggctcaacatgtaagggattctaactcagagaactgacatttaaggctgagcaagggat 212

                                                                       
Query: 245 tgagtatctgtaatcccgacaactaacaggcaaagggagaataatccctgaaagtctgag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tgagtatctgtaatcccgacaactaacaggcaaagggagaataatccctgaaagtctgag 152

                                                                       
Query: 305 gcgagcttgatcaacataccaatttaatcagagctattcagtaaaattccgtcccataaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gcgagcttgatcaacataccaatttaatcagagctattcagtaaaattccgtcccataaa 92

                                                             
Query: 365 ttaaattaggcagctagagagacagtaaactgttcataagtagctgtaaa 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  ttaaattaggcagctagagagacagtaaactgttcataagtagctgtaaa 42


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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