BAC Information

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BAC

Clone NameMSMg01-371P04
Chromosome6 (Build37)
Map Location 86,754,005 - 86,895,313
singlet/doubletdoublet
Overlap gene2610306M01Rik, Aak1
Upstream geneLOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4
Downstream geneLOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371P04.T7 (MSMg01no371_p04.b1)MSMg01-371P04.TJ (MSMg01no371_p04.g1)
ACCAG478329AG478330
length770784
length of high quality
(start - end)		518 (70 - 587)491 (42 - 532)
definitionCHROMAT_FILE: MSMg01no371_p04.b1 PHD_FILE: MSMg01no371_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:35 2005CHROMAT_FILE: MSMg01no371_p04.g1 PHD_FILE: MSMg01no371_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,894,796 - 86,895,313)(86,754,005 - 86,754,492)
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTATGTTACTAACCACTCAACTATGCTGCT
CTCGTATCCAGAAGTGGGCCTCCCATGCCATGGTTACCTGAGTGATGCAC
AAAGGGGACAGAGGCTCAACAAGTACATGCCGCACAGCTGATTTACTAGA
AGCTACAGTGAGTGCGTTATGCTTGGGAAAACCCAATATTGCGGGCATGA
GGTTCCTACAGGAGCCAAAATCTAAAATCTTCCTGTCAGGTCACTGATTC
AGTAACTGTAGAGGCTTCAGTCACTCTATTTACCATAAATTCCAGTAGAG
AGTGGTTGAGTTTCTCACGAGAAAAAAGGAGGGAACAATTTAGGGTCTAG
TAAAAAACACGCACCTGTGTGATAGCCATAGCTGTGGCTTCCCATGGATA
TCACGGATACTTCAGTGAGTATGCACCACCATTTAGCCTTTAGTTTTCCT
TTTGGTTTTTGAGACAGGGTCTTGCTGTGCAAGACCAGACATGACCTTAC
AATCCTCTTGCTTCAGCTCCTGAGTTGCTGGGGTCACAGGGATGGAGAAT
CCCTTCTCCACTGTCTCTAGCTACCTCTCCTCCTTTTATGGGTGCGTGGC
ACTGTACGCTAAAACAGGTGGGTAAAGTGACATAAGAGCTTTGAAAAAAG
GTTGAAGAATCTCCTGGATCAGCCCACCCAAGTATGCTTCTCCTCCCCGC
GGGGGGCTAAAAACAAAAAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCCCTCAACATGGATAACATTTTATTTTAAACTTCTAGAAATGTCAGAT
TTGATTCATGGGCCAGAAATAAAGAGTCATTCTTTTTTTTTTTTAAGACT
AACTTTAATAGCATAAAGATGTCATTATAGACCACAATGTCATATGAAAT
ATGAAAACCCATGAACAGCTAATAAAAATGACGAATACAGGAAAAACTTG
ATCCGCATTGGGTTGGGTTAGATGGGTCTTTGCTGGGTTAGTGGCTTGTT
GGGAGACTACTCTGGCTTTGGAAGGTACTCACTGGCATCTCTGATGATCC
ATTCGATGCTGGTGTCTCTGGCCCAGTTGTGACAAAGTAGCACTGTCTTC
AGGTATTGCCAAGGTGTAATGGGGAACAAGACAAGCCCCACTGAAAGCTG
CTTCTTCATGCTATTCTCTTCTTATGTAATCATTTTAAAAATAAAAAAAT
ATATTAACTTATCTGGGAGGCCTAAAGTGAAGATCAGGGACAACCCTCAG
GAGCCAGTTTTCTCCTCCTGGGTGGTTCCCTGGAACTAAACTCAGGTCCC
CGTGGTTAAAAACGAACTTTACCATTTTGGCTGGCTCTAGGTACTTTACA
CCATAACTCTCCGGGAGGCTTGGCTGTCCCTCCTGCCAACCTGGTGCTGC
CCCCCCAGGGCCCGCTCTTGTCACTTCCCACTTAACCACCTTTCCTCCGG
TTGGAGATTATTTCTTTTTCTACATCATCACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_p04.b1 MSMg01no371_p04.b1 CHROMAT_FILE:
MSMg01no371_p04.b1 PHD_FILE: MSMg01no371_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:35 2005
         (518 letters)



>mm_chr6_86894684_86895601
          Length = 918

 Score =  994 bits (514), Expect = 0.0
 Identities = 517/518 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttatgttactaaccactcaactatgctgctctcgtatccagaagtgggcctcccatgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 cttatgttactaaccactcaactatgctgctctcgtatccagaagtgggcctcccatgcc 571

                                                                       
Query: 61  atggttacctgagtgatgcacaaaggggacagaggctcaacaagtacatgccgcacagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 atggttacctgagtgatgcacaaaggggacagaggctcaacaagtacatgccgcacagct 511

                                                                       
Query: 121 gatttactagaagctacagtgagtgcgttatgcttgggaaaacccaatattgcgggcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gatttactagaagctacagtgagtgcgttatgcttgggaaaacccaatattgcgggcatg 451

                                                                       
Query: 181 aggttcctacaggagccaaaatctaaaatcttcctgtcaggtcactgattcagtaactgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aggttcctacaggagccaaaatctaaaatcttcctgtcaggtcactgattcagtaactgt 391

                                                                       
Query: 241 agaggcttcagtcactctatttaccataaattccagtagagagtggttgagtttctcacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 agaggcttcagtcactctatttaccataaattccagtagagagtggttgagtttctcacg 331

                                                                       
Query: 301 agaaaaaaggagggaacaatttagggtctagtaaaaaacacgcacctgtgtgatagccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 agaaaaaaggagggaacaatttagggtctagtaaaaaacacgcacctgtgtgatagccat 271

                                                                       
Query: 361 agctgtggcttcccatggatatcacggatacttcagtgagtatgcaccaccatttagcct 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 270 agctgtggcttcccatggatatcaaggatacttcagtgagtatgcaccaccatttagcct 211

                                                                       
Query: 421 ttagttttccttttggtttttgagacagggtcttgctgtgcaagaccagacatgacctta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ttagttttccttttggtttttgagacagggtcttgctgtgcaagaccagacatgacctta 151

                                                 
Query: 481 caatcctcttgcttcagctcctgagttgctggggtcac 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 150 caatcctcttgcttcagctcctgagttgctggggtcac 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no371_p04.g1 MSMg01no371_p04.g1 CHROMAT_FILE:
MSMg01no371_p04.g1 PHD_FILE: MSMg01no371_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:35 2005
         (491 letters)



>mm_chr6_86753802_86754692
          Length = 891

 Score =  920 bits (476), Expect = 0.0
 Identities = 485/488 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctccctcaacatggataacattttattttaaacttctagaaatgtcagatttga 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctccctcaacagggataacattttattttaaacttctagaaatgtcagatttga 263

                                                                       
Query: 64  ttcatgggccagaaataaagagtcattcttttttttttttaagactaactttaatagcat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttcatgggccagaaataaagagtcattcttttttttttttaagactaactttaatagcat 323

                                                                       
Query: 124 aaagatgtcattatagaccacaatgtcatatgaaatatgaaaacccatgaacagctaata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaagatgtcattatagaccacaatgtcatatgaaatatgaaaacccatgaacagctaata 383

                                                                       
Query: 184 aaaatgacgaatacaggaaaaacttgatccgcattgggttgggttagatgggtctttgct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaatgacgaatacaggaaaaacttgatccgcattgggttgggttagatgggtctttgct 443

                                                                       
Query: 244 gggttagtggcttgttgggagactactctggctttggaaggtactcactggcatctctga 303
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgttagtggcttgttgggagactactctggctttggaaggtactcactggcatctctga 503

                                                                       
Query: 304 tgatccattcgatgctggtgtctctggcccagttgtgacaaagtagcactgtcttcaggt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgatccattcgatgctggtgtctctggcccagttgtgacaaagtagcactgtcttcaggt 563

                                                                       
Query: 364 attgccaaggtgtaatggggaacaagacaagccccactgaaagctgcttcttcatgctat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 attgccaaggtgtaatggggaacaagacaagccccactgaaagctgcttcttcatgctat 623

                                                                       
Query: 424 tctcttcttatgtaatcattttaaaaataaaaaaatatattaacttatctgggaggccta 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 624 tctcttcttatgtaatcattttaaaaataaaaaaatatattaacttatctgggagggcta 683

                   
Query: 484 aagtgaag 491
           ||||||||
Sbjct: 684 aagtgaag 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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