BAC Information

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BAC

Clone NameMSMg01-372L04
Chromosome6 (Build37)
Map Location 123,279,643 - 123,280,143
singlet/doubletsinglet
Overlap geneEG232358
Upstream genePhc1, 1700063H04Rik, LOC677375, 4933426K21Rik, EG667035, Mfap5, Aicda, LOC667105, Apobec1, Gdf3, Dppa3, EG667107, LOC100043805, Nanog, LOC100038891, Slc2a3, LOC100043502, D530008I22, LOC100043505, Foxj2, C3ar1, Necap1, EG384482, Clec4a1, Clec4a3, Clec4a4, Clec4b1, Clec4a2, Clec4b2, Ppia-ps6_1344.1, Clec4n, Clec4d, Clec4e
Downstream geneEG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372L04.T7 (MSMg01no372_l04.b1)MSMg01-372L04.TJ (MSMg01no372_l04.g1)
ACCAG478901AG478902
length742756
length of high quality
(start - end)
504 (41 - 544)497 (72 - 568)
definitionCHROMAT_FILE: MSMg01no372_l04.b1 PHD_FILE: MSMg01no372_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:30 2005CHROMAT_FILE: MSMg01no372_l04.g1 PHD_FILE: MSMg01no372_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:30 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTCTTTTTCATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTT
TCTGTATCCATTCCTGTGTTGAGGGGCATCTGGGTTATTTCCAGCTTCTG
GCTATCATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTT
ACCAGTTGGAACATCTTCTGGATATATGCCAAGGAGAGGCATTGCGGGAT
CCTCCAGTAGTACTATGTCCAATTTCCTGAGGAACCGCCAGACTGATTTC
CAGAGTGGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCC
TCTTTCTCCCCATCCTCGCCAGCCTCTGCTGTCACCTGAATTTTTGATCT
TGGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGTTTGTTTTGATTTGC
ATTTTCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGC
CATTCGGTATTCCTCACGTGAGAATTATTTGTTCAGCTGTGAGCCCAATT
TTTTAATGGGGCTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTA
TATATATTGGATATTAGACCCTTATTTGATTTGGGATAGGTAAAGATTCT
TTCCTAACTGTTGGGGGTCTTTTGGCTTATGATGGCGTCTTTTGCCTTGC
CAACTTTTCCCTTTTTCCAGCCCCTCTTTTTAACCCTATCCG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACTCTGAGAACAGCACATGGTTCTGAAC
ACAAAGACACTTACCTCCTTGTCATATTTACCCCAAGTTATGAGTTTTTC
ATCTAGTGAAAAATGCTGAACAGTGTGAGATTCAAAGACAAACTCGCCAA
CCTTCACTTGAGATTTGGTACTGCTTGGCAGAGAATGGTAATTTAAGATG
TCAAACTTGGTTGCAGAAACCTCCTTGTTCCCAACATTCTCCTCATTGGT
GCTTCTCCCAAAACGGCCCTTTTGTAAGAATGGATGGAGCTAAAAGTAAA
AAGTAATGTTCAGAACTTATAATATAAGTCACTGAGATGTAAATAAACCT
GGTTACTTTAACTGTCCTTTCTTTCTCTAACTGTATGTTCTTGTGGCTTT
TGTTATTGTTTTGTATATCAAACATTTGTCATAGGGCTAATCCATACCAG
AACTAAGCTTATATCATACACACACACACACACACACACACACACATACA
CACACACACAAACATTCATATTAAACTCAACAAATACTGGAGGTAACTAA
AGTTTTTAACCAAATGGACATTACAGGAGTAATATAGCAAAACTCCTTCC
AGGGATACTAATTAGCAAACAAAAATTCCCGATATCTTTTATTTCCCTAT
AATATATAATAGCCACCCCCCATTAACCGGGAATTTCTATAATTATTGAA
AATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_l04.g1 MSMg01no372_l04.g1 CHROMAT_FILE:
MSMg01no372_l04.g1 PHD_FILE: MSMg01no372_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:30 2005
         (497 letters)



>mm_chr6_123279501_123280397
          Length = 897

 Score =  857 bits (443), Expect = 0.0
 Identities = 485/501 (96%), Gaps = 4/501 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactctgagaacagcacatggttctgaacacaaagacacttacctccttgtcatatttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 cactctgagaacagcacatggttctgaacacaaagacacttacctccttgtcatatttac 584

                                                                       
Query: 61  cccaagttatgagtttttcatctagtgaaaaatgctgaacagtgtgagattcaaagacaa 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 583 cccaagttatgagtttttcatctagtgaaaaaagctgaacagtgtgagattcaaagacaa 524

                                                                       
Query: 121 actcgccaaccttcacttgagatttggtactgcttggcagagaatggtaatttaagatgt 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 actcgccaacctttacttgagatttggtactgcttggcagagaatggtaatttaagatgt 464

                                                                       
Query: 181 caaacttggttgcagaaacctccttgttcccaacattctcctcattggtgcttctcccaa 240
           ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 463 caaacttggttgcggaaacctccttgttcccaacgttctcctcattggtgcttctcccaa 404

                                                                       
Query: 241 aacggcccttttgtaagaatggatggagctaaaagtaaaaagtaatgttcagaacttata 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aacggcctttttgtaagaatggatggagctaaaagtaaaaagtaatgttcagaacttata 344

                                                                       
Query: 301 atataagtcactgagatgtaaataaacctggttactttaactgtcctttctttctctaac 360
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 343 ctataagtcactgagatgtaaataaacctggttactttaactatcctttctttctctaac 284

                                                                       
Query: 361 tgtatgttcttgtggcttttgttattgttttgtatatcaaacatttgtcatagggctaat 420
           | ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tatatgttcctgtggtttttgttattgttttgtatatcaaacatttgtcatagggctaat 224

                                                                       
Query: 421 ccataccagaactaagcttatatcatacacacacacacacacacacacacacacatacac 480
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 223 ccataccagtactaagcttatatcatacacacacacacacacacacacacacacacacac 164

                                
Query: 481 acacacaca----aacattca 497
           |||||||||    ||||||||
Sbjct: 163 acacacacacacaaacattca 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)