Query= MSMg01no372_m02.b1 MSMg01no372_m02.b1 CHROMAT_FILE:
MSMg01no372_m02.b1 PHD_FILE: MSMg01no372_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:34 2005
(623 letters)
>mm_chr6_100991823_100992845
Length = 1023
Score = 1100 bits (569), Expect = 0.0
Identities = 602/623 (96%), Gaps = 16/623 (2%)
Strand = Plus / Minus
Query: 1 ctgccatgtccaatagacactctttccagtcctttctgacctctggctctaacaacattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ctgccatgtccaatagacactctttccagtcctttctgacctctggctctaacaacattt 665
Query: 61 tctatccctcttccacaatgatccctgggtttgggggcagtagtaagctacaatatggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tctatccctcttccacaatgatccctgggtttgggggcagtagtaagctacaatatggaa 605
Query: 121 gtggcatttgtggccaagcacttgacagattcttattgcctggaatttgaccagttgtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gtggcatttgtggccaagcacttgacagattcttattgcctggaatttgaccagttgtga 545
Query: 181 gtttctgcgatattttcctttctaccacatcaactttgacctacatctactgtataatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gtttctgcgatattttcctttctaccacatcaactttgacctacatctactgtataatac 485
Query: 241 tgaactttgtttattttaatataatatgaagatagttataatatataagattttaggcta 300
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 484 tgaactttgtttaacttaatataatatgaagatagttataatatataagattttaggtta 425
Query: 301 ctgaataggatttttttttaagttatgggaaattcagggctggagtgatgcctcagtggt 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 424 ctgaataggatttttttttaagttatgggaaattcagggctggagtgttgcctcagtggt 365
Query: 361 taagattactggctgcttttccaaaggacctgagttcaattcctaatatccatatggtag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 taagattactggctgcttttccaaaggacctgagttcaattcctaatatccatatggtag 305
Query: 421 ctcacaactatctttaattgcagatgatctcaaactgcagaaaatctgatgccctcctgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ctcacaactatctttaattgcagatgatctcaaactgcagaaaatctgatgccctcctgt 245
Query: 481 cacctctgagggcattgcacatgtatagtacacagactatatatatccatatatatatcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cacctctgagggcattgcacatgtatagtacacagactatatatatccatatatatatcc 185
Query: 541 atatatatatatatatatatatatatatatatatatatatatattacacataaagtaaaa 600
|||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 184 ----------------atatatatatatatatatatatatatattacacataaagtaata 141
Query: 601 aaataaagttatttttaagttgt 623
|||||||||||||||||||||||
Sbjct: 140 aaataaagttatttttaagttgt 118
Score = 70.3 bits (36), Expect = 4e-16
Identities = 44/48 (91%), Gaps = 4/48 (8%)
Strand = Plus / Plus
Query: 541 atatatatatatatatatatatatatat--atatatatat--atatat 584
|||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 157 atatatatatatatatatatatatatatggatatatatatggatatat 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 6
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_m02.g1 MSMg01no372_m02.g1 CHROMAT_FILE:
MSMg01no372_m02.g1 PHD_FILE: MSMg01no372_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:34 2005
(514 letters)
>mm_chr6_100827412_100828325
Length = 914
Score = 973 bits (503), Expect = 0.0
Identities = 512/515 (99%), Gaps = 1/515 (0%)
Strand = Plus / Plus
Query: 1 cagtccccttctgtggatgaagatggctcctccagttatgatgtctgcctggatgctgcc 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 200 cagtccccttctgtggatgaagatggctcctccagttatgatgactgcctggatgctgcc 259
Query: 61 gtgtttcctgccttgatgataatagactgaacctctgaacctgtaagccagccccagtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtgtttcctgccttgatgataatagactgaacctctgaacctgtaagccagccccagtta 319
Query: 121 aattttttttt-aaaatgagttgctttggtcatggtgtctcttcacagcaatgaaaccct 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aatttttttttaaaaatgagttgctttggtcatggtgtctcttcacagcaatgaaaccct 379
Query: 180 aagtaagccacacccactgatgcagtagaattataaatgttatgagggcaaccaatcagc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagtaagccacacccactgatgcagtagaattataaatgttatgagggcaaccaatcagc 439
Query: 240 ttttggttctgtcaaagacctgctctatgagatggaactcctacttggcaccataagtag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttttggttctgtcaaagacctgctctatgagatggaactcctacttggcaccataagtag 499
Query: 300 ggtcacagactgtggctagataggccagaggccctgggagggaaccgaacactattattc 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 500 ggtcacagactgtggctagataggccagaggccctggaagggaaccgaacactattattc 559
Query: 360 cgctgaacggacatagtatagaaaccgctcccaatacctagcatatctctcaacctttag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cgctgaacggacatagtatagaaaccgctcccaatacctagcatatctctcaacctttag 619
Query: 420 cagagaaactgcttcttgcaatagatggcgattaattctaagacactcaacttagtctgg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cagagaaactgcttcttgcaatagatggcgattaattctaagacactcaacttagtctgg 679
Query: 480 cccatgcctggagaataagagactgtggagtgctt 514
|||||||||||||||||||||||||||||||||||
Sbjct: 680 cccatgcctggagaataagagactgtggagtgctt 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
