XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATT
AAAAGAAACGTTTAAAAGAAAGTTCAAAATGGGTTCAAGAAAAGAAACAG
GAAAATCTTTGTGGCATCATTTTCATTTTGGTGGATATGATGTGTGAACA
AAACTTACATGTAAGACTTATGACATGTTTTTGGCCTTTGAGAAAAATGA
AGAGTATAGCAGGTTCACAGGTATCCATATGCTCAGAGTCAAGAATATAA
ATGAATTCATTCATTCTAGAATGCCTTTATAAATTGCTTAAGCGATTTCT
TATCCTTATACTGTATACTTGAGTGTTATTTTTATATCACATTATATATA
TGTATGTATATATGTGTATATATATATATACACATATATACATACATATA
TATAGTAGTTAGAAATTTATCCAATGAAATCCTTACTTCTTCATAGATCT
TCTGTGTACTTTAGGTTAGCAAGAACATTTTAGGTATATAAACATATATA
TATATATATATACATAATATACATATATATATATATATACATAATTATAT
CTATTTTACATGTATGGTATAGCGTTTATAATTAAAAATGCAAGTTATCC
CCTGAAGACTTTTCTATACCAATAATACTACTGGATGTTGTACAGCATTC
CCCCATTAATAAATATTATCCAATTTTTAAAAAAATTGCTTCCCCCAAAA
AAAAATCAGGGTCCCCCCAAATAAGGATTACTTATTTCCGCGCTTTTGAG
GTCTTTAAATCCCGCTCATTACAACG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATGTAGACCTAGAGGTTACCTTTCAAAAGTTGAA
GTTTAGTTTTCTCCAAGAAGAGGTCAGGGAAAAAACACCAACTTGTATTT
ATTTATTTATTTATTTATTTATTTATTCATTTATTTATTTATTTGTTTGT
TTATTTATTTATTTATTTTTGCTTAAGAAATTGTTCTGCAGGGGGAGCCA
TCTTGGTTCCCGGAATCCGACTGAGACTGGTCTGTGCAGGTGAGAGTGTG
GACTGCAGAGGCTAACAGTTTCTGGGACAGGCAGAAGCCACAGAGCTTCT
GGGACAGAACACATTTCAGGATCCAGGCAGACAGGCACCTTCCCTGCCAG
AGGAGAGGTGTCCACCCCGCCCAGGAGGACTTTGCCTCAGCACCTGGGGG
AGCCATCTTGGTTCCCAGATTCCTCCCAGACTAGTCTGCACAGATGAGAG
TGTAGACTACAGAAGCTACACATATTCTGGGATAAGCCCTGTTTCGGGCC
TTTATCTTCTACCANGAGGCAGGTCCGAAAAACAGATATCTGTCCACCTT
TCCTGCAAGAGGAGAGCTTGCCTGCCCAAAGTGCTCCTACCACTGAAATT
CAGGGGGAGATCTAGCCTTCCCAGTCCGCTGATAAAAGGTATCCAAATTC
CAAAAGGAATAACTCTTTCCTCAGAAAACATTAAAAACTAACTTCCCGGG
ATTACCCAAAGGTTTCAAGGGAATGGTAAAAACTTTCATATCAAAACCCA
TAA

Query= MSMg01no372_n21.b1 MSMg01no372_n21.b1 CHROMAT_FILE:
MSMg01no372_n21.b1 PHD_FILE: MSMg01no372_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:43 2005
         (519 letters)



>mm_chr6_104469335_104470252
          Length = 918

 Score =  822 bits (425), Expect = 0.0
 Identities = 496/533 (93%), Gaps = 28/533 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattaaaagaaacgtttaaaagaaagttcaaaatgggttcaagaaaagaaacagg 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaaaagaaaagtttaaaagaaagttcaaaatgggttcaagaaaagaaacagg 264

                                                                       
Query: 65  aaaatctttgtggcatcattttcattttggtggatatgatgtgtgaacaaaacttacatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaatctttgtggcatcattttcattttggtggatatgatgtgtgaacaaaacttacatg 324

                                                                       
Query: 125 taagacttatgacatgtttttggcctttgagaaaaatgaagagtatagcaggttcacagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 325 taagacttatgacatgtttttggcctttgagaaaaatgaagagtatagcaggttcacag- 383

                                                                       
Query: 185 tatccatatgctcagagtcaagaatataaatgaattcattcattctagaatgcctttata 244
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatttatatgctcagagtcaagaatataaatgaattcattcattctagaatgcctttata 443

                                                                       
Query: 245 aattgcttaagcgatttcttatccttatactgtatacttgagtgttatttttatatcaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aattgcttaagcgatttcttatccttatactgtatacttgagtgttatttttatatcaca 503

                                                                       
Query: 305 ttatatatatgtat----gtatatatgtgtatatatatatatacacatatata------c 354
           |||||||||| |||    ||||||||||||||||||||||||||| |||||||      |
Sbjct: 504 ttatatatatatatatatgtatatatgtgtatatatatatatacatatatatatatatac 563

                                                                       
Query: 355 atacata--------tatatagtagttagaaatttatccaatgaaatccttacttcttca 406
           |||||||        ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 564 atacatacctacatatatatagtagttagaaatttacccaatgaaatccttacttcttca 623

                                                                       
Query: 407 tagatcttctgtgtactttaggttagcaagaacattttaggtatataaacatatatatat 466
           |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 624 tagatcttctgtgtacttaaggttagcatgaacattttaggtatataaacatatatatat 683

                                                                
Query: 467 atatatatacataatatacatatatatatatatatacataattatatctattt 519
           |||||||||     ||||  ||||||||||| | | |||||||||||||||||
Sbjct: 684 atatatata-----tata--tatatatatattt-t-cataattatatctattt 727



 Score = 78.1 bits (40), Expect = 1e-18
 Identities = 46/48 (95%)
 Strand = Plus / Minus

                                                           
Query: 320 tatatatgtgtatatatatatatacacatatatacatacatatatata 367
           ||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 556 tatatatatgtatatatatatatacacatatatacatatatatatata 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 101
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 519
Length of database: 918
Length adjustment: 10
Effective length of query: 509
Effective length of database: 908
Effective search space:   462172
Effective search space used:   462172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)